Gene Cpin_4272 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4272 
Symbol 
ID8360445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5335503 
End bp5335952 
Gene Length450 bp 
Protein Length149 aa 
Translation table11 
GC content44% 
IMG OID644966435 
ProductCupin 2 conserved barrel domain protein 
Protein accessionYP_003123923 
Protein GI256423270 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.510368 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.109894 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAAGA GAGAAATCAC CTATGTATGT ATCACCGTAC TAATCATGTG TATACCCATG 
GCGATCATTG CGCATAATGA TCAGCGTACA CCCCTATCCT CTGCAATATA CGACTGGAAT
AAAATTAAAG TTGAAGCTAC TAAAACGGGA GAAAAACGAC AATTTCTGCA AGCGCCCACT
CCGACACTGG ATGAATTGGA GCTACATGTA ACTACTTTGA ATCCTGGAGA GGCGCCACAT
CCCCCACATC AACATCCCGA CGAAGAATTG ATTATTGTAA AAGAGGGAAT AGTTGAATCG
ACGGTGAACA AGACCACGAA ACGCGTCGGC CCGGGCTCGG TTATTTTCCA GGCATCTAAT
CAACTGCATG GTATCAGGAA TGTAGGCGCT ACTCAGGCAG TATACTATGT TATTAAATGG
AAGACAGAAA AGACGCCTAG GGGTAAGTAA
 
Protein sequence
MTKREITYVC ITVLIMCIPM AIIAHNDQRT PLSSAIYDWN KIKVEATKTG EKRQFLQAPT 
PTLDELELHV TTLNPGEAPH PPHQHPDEEL IIVKEGIVES TVNKTTKRVG PGSVIFQASN
QLHGIRNVGA TQAVYYVIKW KTEKTPRGK