| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4268 |
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| Symbol | |
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| ID | 8360441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 5328117 |
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| End bp | 5330027 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 644966431 |
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| Product | Sel1 domain protein repeat-containing protein |
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| Protein accession | YP_003123919 |
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| Protein GI | 256423266 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.582346 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATGGA GATATGAGAT GCCTCTGCTA TTACAACCTT TGTTGATAAG TGGCGGTTTT
ATTGAAAATA ATGTTTTATA CTACGATGCC AGATCTGGTA TCGAAAATCT GAAAAGATTT
TATAACTTTC TGGATTCCAC GGAACTGCTC ATTAAGGACA AAAGCCTGTT TACAAAAGCT
AAGAATACGC TATTCAAATA TCTGGATAGT CTGGCACTCC CCTATTTTAG TATGGATGCC
CGGGATGCAT TCAATATAGA AGAGATACCG CACAAGGAAC AGGCGGCTGT CTGGATGGCA
GATATCGCGT ATAACAATGC GATGATTACC CATGCCATGG ACAACAATAA CATCTCCCTG
TTAACTTACA GTCAACTTAA ACATGTCAGT ACGGCGTTTC ATTCATTTGC TGAACTGCTG
AATTATGTGG ACTATGATTA TGGATGGCGA CACATCTACC AGGAATCAGG AAGAGAAGAA
ATTTACAATG AGAATGGACT ATGGGGATTG AAAAATGCCC ACGGAGAAAT ATTGCTACAT
CCACAATTTG ATGAATTTTA TGAATTCAGC GAACAGGATG TTGCGGTGGT CATGAAGGAG
CAGCAGTATG GTTATGTGCA CAGATCAGGT GAGGTAATAG TGCCTCCGGA ATGGGATAAT
GCTTACGATT TTGATTATTC CAATCTGGCG ATTATTCAAC GCAATGGTCT TCTGGGACTC
ATCAATCTTT CGGGAAAAGT GGTTGTTGCA CCTACATACG AAGCCCTTAA CAAATTTGGG
TCTCAAGGTC ATTACATCGC ACAAAAGAAT GGAAATTGGG GGGTATTGTC AGAAGATGGA
AAAGTAATCA TCAATTTCAA ATATGACAAT ATAGAGCTGT TACATGACGA TGTAATCATG
CTACAGAAAG ATGGTTATTA CAGCCTTTCT GAAGATGGTG ACCAATTCGA CCTAATCGTA
CATAAAGCTC CTCCTCAGGG CTTCGCCTGG GCCATCAAAG GCAAGGAAGT ATACCTTATA
GATAAATATG GTATATCAAG AGCCAATAAA GACCTCGTCC GGCAGGATGC AGAAAATGAA
GGCTACAGTC TTTATTATGA TGATATCGTG CGTGCCAGAC TCCTGGCATA TGCAAAGTCC
TCCGCTGAAA ATACGGTTAC AGACGTTTAC ACACCGGTCG AAGAACTGTA TAATATCGGT
GTAGATGCTT ATAACAGGCA AGATTACACC TCTGCTATTT ATCACTACAC ACTTGCTGCT
GAAAAAGGAT TTGGTTATGC GATGAACAAC CTGGCTTATA TCTATTACAT GATAGAAGGC
TATGTAAATG ATGATAAAGC ATTTTACTGG TATGAGCAAG GAGCTGCTGC GCGCAATACC
AATGCGCTTA ATGGATTAAG TCTGTGTTAC CAGTATGGAA TAGGAACCAT CCCTGATATA
GAAAAAGCTA TTGACTTATT ACTACAGGCT GCTGAAGATG GTATGGCAGC TGCACATAAT
AATCTGGGAT TTCTGCTTTA TAAGACTGAT CCCGAGCTGG CATTATTTCA CTATCACCAG
GCTGAAGCAC TGGGTGAACC TGATTATGGA TTGCTGGGAT CCATGTATGA AGAAAAAGGA
GATTTCGAAA CCGCTTTCCG CTATCACCAA AAGGACGATT CGGAGATAGG TGCGTTTAAT
CAGGGACATT TCTATCAGAA GGGATTAGCT ACAGAAAAGG ATATAAAAGC AGCAATAGGC
TGTTTTCAAA CGGCGATAGA CGGTGGTTAT GATAGAGCGC ATATTGAACT GGCGCGCATA
TATCTGTTTG AAGAAGGATT TATTGATAAG GATAAAGCAA AAGTGCATAT TGTAGCGGCG
AAAGAAGCGG AGATTGAGAT TCCTGAGGAA TTCAAAGATC CATTTGATTG A
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| Protein sequence | MEWRYEMPLL LQPLLISGGF IENNVLYYDA RSGIENLKRF YNFLDSTELL IKDKSLFTKA
KNTLFKYLDS LALPYFSMDA RDAFNIEEIP HKEQAAVWMA DIAYNNAMIT HAMDNNNISL
LTYSQLKHVS TAFHSFAELL NYVDYDYGWR HIYQESGREE IYNENGLWGL KNAHGEILLH
PQFDEFYEFS EQDVAVVMKE QQYGYVHRSG EVIVPPEWDN AYDFDYSNLA IIQRNGLLGL
INLSGKVVVA PTYEALNKFG SQGHYIAQKN GNWGVLSEDG KVIINFKYDN IELLHDDVIM
LQKDGYYSLS EDGDQFDLIV HKAPPQGFAW AIKGKEVYLI DKYGISRANK DLVRQDAENE
GYSLYYDDIV RARLLAYAKS SAENTVTDVY TPVEELYNIG VDAYNRQDYT SAIYHYTLAA
EKGFGYAMNN LAYIYYMIEG YVNDDKAFYW YEQGAAARNT NALNGLSLCY QYGIGTIPDI
EKAIDLLLQA AEDGMAAAHN NLGFLLYKTD PELALFHYHQ AEALGEPDYG LLGSMYEEKG
DFETAFRYHQ KDDSEIGAFN QGHFYQKGLA TEKDIKAAIG CFQTAIDGGY DRAHIELARI
YLFEEGFIDK DKAKVHIVAA KEAEIEIPEE FKDPFD
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