Gene Cpin_4258 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4258 
Symbol 
ID8360431 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5320160 
End bp5320513 
Gene Length354 bp 
Protein Length117 aa 
Translation table11 
GC content39% 
IMG OID644966424 
Producttranscriptional regulator, HxlR family 
Protein accessionYP_003123912 
Protein GI256423259 
COG category[K] Transcription 
COG ID[COG1733] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.495446 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.515544 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGATGTA AAATAGCAGA GTTCCAACAG GAACAAAAGA AGAGAATGAG ATCTGTGCAA 
GATGCAATGG ATGCGCTAAA TGGCAAGTGG AAGATCGCTA TTATTTCATC AATTTGTTGC
TATGGGAAAC GGCGGTTTTC TGACATTTTG AATGATATAG ACGGAATTTC CAACAGAATG
CTAAGCAAAG AATTAAGGGA ATTAGAAATA AACCAGATAG TAAAACGGGC CATATCAGAC
ATTCATCCCA TCACTGTTCA ATATGAACTT ACAGAACACG GGGATACACT ACAAACCATT
ATTAGTAATC TCTCTGACTG GGGCATTGCT CACCGGAAAA AGATAGTTGG GTAA
 
Protein sequence
MGCKIAEFQQ EQKKRMRSVQ DAMDALNGKW KIAIISSICC YGKRRFSDIL NDIDGISNRM 
LSKELRELEI NQIVKRAISD IHPITVQYEL TEHGDTLQTI ISNLSDWGIA HRKKIVG