Gene Cpin_4243 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4243 
Symbol 
ID8360416 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5306836 
End bp5307153 
Gene Length318 bp 
Protein Length105 aa 
Translation table11 
GC content41% 
IMG OID644966410 
Producttranscriptional regulator, HxlR family 
Protein accessionYP_003123898 
Protein GI256423245 
COG category[K] Transcription 
COG ID[COG1733] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.333534 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.800382 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAATA AGTTAGACCA TGCTGACTGT CCTATTACAG AGACGATAGC CATGTTTGGA 
GGACGGTGGA AGGTGACAAT TTTACGTGTG CTTTTCAAAA ATACCAGACG TTTTGGTGAA
ATCCAGGTTA GGATACCTTC TATTTCAAAG AAGGTGTTAA CCGAGCAACT AAGAGAGCTT
GAAGCTGACG GCTTAATCAG CAGGAAACAG TACAAGGAAC TTCCCCCCCG GGTAGAGTAT
GCGCTCACTG ATTTTGGAAA AAGCCTTTGC CCTTTGTTAA TTGATATAGT AGCTTGGAAA
AGAAAAAATA TTGGATAA
 
Protein sequence
MENKLDHADC PITETIAMFG GRWKVTILRV LFKNTRRFGE IQVRIPSISK KVLTEQLREL 
EADGLISRKQ YKELPPRVEY ALTDFGKSLC PLLIDIVAWK RKNIG