| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4200 |
|---|
| Symbol | |
|---|
| ID | 8360373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5251309 |
|---|
| End bp | 5253084 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644966369 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003123858 |
|---|
| Protein GI | 256423205 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.117631 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAACC CATATATATC CCTGTTGCGG ACAGCCTGGA TTTATGCGCG AAAAGAACGG
AAAAGGTATG TATTGGTATA TGCCATGTTC GTCGTTTCTG CCATTATCAA CGCACTATAT
CCCGTATTAC TGGGATGGTT TATCAACAAG ATCCAGCAGG ATACACAGCA GGTATTACAT
TATGCATTCC TGTATGCAGG CAGCTACTTT GTACTTAAAT TACTGGAATG GGCCTTTCAC
GGCCCCGCCC GTGTAATGGA GCGTGAGCTC GCTTTTAATC TCAGCCGTAA CTTCCTGCAG
GAACGATATC ACCAGGTATT GCACCTGCCG GTAAAATGGC ACCAGGACCA TCACAGCGGC
GCTACGATCA ACCGCATACG TAAAGCTTAC GAAGCCCTGA AAACTTTCTT CGATCACGGC
TTTATGTATC TGCGGGCAGT CGGTAAACTC ATTTTCTCGG TAGCTGCCAT CGTATACTTT
TCGCCGCTGT TTGGTACCAT CGGTGTTGTG CTCGGTATCA TTACCATCTG GGTAATCTTT
AAGTTTGACA AACCTTTTAT CCGGACCCTG GATGAAGTGA ACGAAAAGGA ACACGTCGTA
TCCTCCACTC TGTTCGACAG CCTTTCCAAT ATCATGACCG TCATCACCCT GCGATTGGAA
AAGAGTATGG AAACCGGTCT CCTGGGGAAA GTACATCAGA TCGTACCACC GTTTAAAAAG
AATATCCGGA TCAATGAATG GAAATGGTTT GTGGCAGATG TGCTGATTAC GGTGATTTAT
TGTGTGGTAG CCGTTGGTTA TATCATACAG TACTGGCAAC CCGGACAGGT GTTTTATATC
GCCGGACTGG TCACCTTACT GGGATACGTG AACCAGTTCA CCAGCGTATT CTACGACTTC
GCCTGGCAGT ATACCGATAT CACCCAATAC AACACCTATG TACAAACGGC AGCCAATATT
GATGAAGCAT TCAAAAAACA ACACCGCCCG GATGCACCCA CAGATCTGCC GGATAGCTGG
CAGATGATCA GTATAAAAGA CCTGAACTTC TCCCATCGCG AGGAATACGC CGAACATGCA
CCGCAAAGCC TGCACGGACT GAACATCCAG ATTCCCCGGG GGAAACGTAT CGCATTGATA
GGAGAAAGCG GTAGTGGTAA AAGTACCTTA CTGTCTTTGC TGAGGGGATT ATACGATCCT
CAGCCCGGTA TGGAACTCTC CGTAGATGGA AAGATATATG ATATGGATAC GCTCAATGAA
ACCGTCACCC TCTTTCCGCA GGAACCGGAA ATATTTGAGA ATACTATTGC TTATAATGTC
ACACTCGGAC TCCCCTTCAG CGAGGCAGAT ATTGAAGAAG TCTGCGAAGG CGCACATTTT
ACCGATGTGA TCAGACAACT GCCCCTCGGA CTGGAATCTG ATATCCGGGA GAAAGGGGTC
AATCTCTCCG GCGGACAAAA ACAACGGCTT GCCCTGGCAC GTGGTATACT CGCCGCCCGC
GAAAGTGAAG TAGTACTGCT CGATGAACCT ACCAGCAGTG TAGACCCCAA AACGGAAGTC
ATGATCTACA CCAAACTATT CAAGGCTTTT GCAGATAAGG CAGTCATCTC CTCGATTCAC
CGCCTGCACC TGCTGACACA CTTCGATTAT GTATATATAC TCCAACAGGG AAAAATTGTC
GGGGAAGGCA CTTTTGAGCA GCTGAAGGAG CACAGCCCTA TCTTCCAGGA ACTCTGGAAA
CACCAGAAAG ATACCATGGG CAAACATTAT CAATAA
|
|---|
| Protein sequence | MANPYISLLR TAWIYARKER KRYVLVYAMF VVSAIINALY PVLLGWFINK IQQDTQQVLH
YAFLYAGSYF VLKLLEWAFH GPARVMEREL AFNLSRNFLQ ERYHQVLHLP VKWHQDHHSG
ATINRIRKAY EALKTFFDHG FMYLRAVGKL IFSVAAIVYF SPLFGTIGVV LGIITIWVIF
KFDKPFIRTL DEVNEKEHVV SSTLFDSLSN IMTVITLRLE KSMETGLLGK VHQIVPPFKK
NIRINEWKWF VADVLITVIY CVVAVGYIIQ YWQPGQVFYI AGLVTLLGYV NQFTSVFYDF
AWQYTDITQY NTYVQTAANI DEAFKKQHRP DAPTDLPDSW QMISIKDLNF SHREEYAEHA
PQSLHGLNIQ IPRGKRIALI GESGSGKSTL LSLLRGLYDP QPGMELSVDG KIYDMDTLNE
TVTLFPQEPE IFENTIAYNV TLGLPFSEAD IEEVCEGAHF TDVIRQLPLG LESDIREKGV
NLSGGQKQRL ALARGILAAR ESEVVLLDEP TSSVDPKTEV MIYTKLFKAF ADKAVISSIH
RLHLLTHFDY VYILQQGKIV GEGTFEQLKE HSPIFQELWK HQKDTMGKHY Q
|
|---|
| |