Gene Cpin_4048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4048 
Symbol 
ID8360221 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5035953 
End bp5036723 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content43% 
IMG OID644966220 
Productfatty acid desaturase 
Protein accessionYP_003123709 
Protein GI256423056 
COG category[I] Lipid transport and metabolism 
COG ID[COG1398] Fatty-acid desaturase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.295457 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0470616 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGCGA TTCTGATATT CTTTTTTTCC CACTGGTTCT TATCGTTGTT CTTTCACACC 
TTTTTCCTGC ATAGATATGC ATCCCACCAG ATGTATACTA CCAGCAAAGG ATGGGAAAGA
GTATTCTACT TCTGCACCTG GTTTTTCCAG GGTACCTCTT TCTTAGTGCC GAGAGCGTAT
GGTTCAATGC ACCGCATGCA CCATGAGTTC AGCGATACTG AGCATGACCC GCATTCTCCA
CACTTCTTTA AAGATGTATG GTCTATGATG TGGCAGACCC GTAAGTTGTA CAACGACATT
TATCATAAGA AGGTGGTTCT TGATGAGAAA TTCACTAAAA ACCCTCCTTT ACCGGTATGG
GATGCATTAG ATCGTTTCGG CGATTTCACA GCAACTCGTC TGGCATGGGC TGGTATTTAT
ATCGCTTTTT ATGTTGCATT CGCTCCAGCC TGGTATTGGT ATCTGCTGTT GCCAATTCAC
TTCCTGATCG GACCTGTACA AGGTGCAGTA GTGAACTGGT GCGGTCACAA ATATGGTTAT
CAGAACTTTG AGAATGGCGA TAAATCCCGC AATACTTCTC CATGGGGTAT CCTGCTGTTG
GGAGAGCTTT TCCAGAACAA CCATCATAAA TTTGGTGAAA GTCCGAATTT TGCAAAGAAA
TGGTTTGAAT TTGATCCAAC TTATCCGGTA ATGAAGTTCT TCAACTTCAT CGGTATCATC
AAACTGAAGA AAGCCGAAGT GAAAGTGGTT AACATGAAAG CGGCTGCTTA A
 
Protein sequence
MTAILIFFFS HWFLSLFFHT FFLHRYASHQ MYTTSKGWER VFYFCTWFFQ GTSFLVPRAY 
GSMHRMHHEF SDTEHDPHSP HFFKDVWSMM WQTRKLYNDI YHKKVVLDEK FTKNPPLPVW
DALDRFGDFT ATRLAWAGIY IAFYVAFAPA WYWYLLLPIH FLIGPVQGAV VNWCGHKYGY
QNFENGDKSR NTSPWGILLL GELFQNNHHK FGESPNFAKK WFEFDPTYPV MKFFNFIGII
KLKKAEVKVV NMKAAA