| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4044 |
|---|
| Symbol | |
|---|
| ID | 8360217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5031377 |
|---|
| End bp | 5032678 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644966217 |
|---|
| Product | tyrosyl-tRNA synthetase |
|---|
| Protein accession | YP_003123706 |
|---|
| Protein GI | 256423053 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0162] Tyrosyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00234] tyrosyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.225408 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0290637 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACGA TTATTGTAAA TAAGATATAC CATCATAGCT CACTGGAGCC CCGGACATTC
AATTGTCCGG GGCTTTTTTA TTTCTATCAG ATCATGACAA CAACAACACT ACCCACGGCA
AATGCAGCAG TCATATTGCC AGAAAACGGC CTCACAGAAA AAATCAGGCA GGCCGAAAAA
GACAATCGTA ACCTGATCAT TAAACTGGGC TTTGATCCTA CCGCCCCTGA CCTACACCTC
GGACACGCCG TAGTCCTGAA ACAGCTACGC GCATTTCAGG ACCTGGGTCA CCAGGTCGTT
ATTATCGTAG GCAGCTTCAC CGCACAGATC GGAGATCCTA CCGGTAAAAA CAAAAGCCGG
AAGCCTTTAA GCAAGGAAGA AGTGCTGGCG AATGCGGATA CTTACATCCG TCAGTTAGCG
AAGATCATTG ACACCAACAA ATGTCAGATC CTGTTCAATG GAACCTGGTT GGATAAGCTG
TCCTTTCCCG AGATCCTTCA GTTACTTTCC AAAGTAACCG TCGCCCAATT GCTGCATCGC
AATGACTTCA ACAAACGATT TACGGAAAAC GTGCCCATCG CTATGCACGA ACTCATGTAC
CCTATCCTGC AAGGATTTGA TTCTGTGCAG ATTAACGCAG ACATTGAAAT GGGTGGTACA
GATCAGTTAT TCAATTGCAC CATGGGCAGA CAATTGCAGG AAGCGCACGG GCTTCCACCT
CAAGTTGTAA TGTGTATGCC CCTGCTAAGA GGTCTTGATG GAAAGGAGAA AATGAGCAAG
TCCCTGAATA ACATTATCGG TCTGACGGAT ACACCCAACG AGATGTTTGG AAAGACCATG
TCCATCCCCG ACCACCTGAT TGATGAATTT ATTGATCTGA CCACAGATTT CTCCCCCGAG
AAAAAGCATG CCCTGAAACA ATTAATGGTA TCCGGTGAAA ATCCTATGAA TATCAAGAAG
ATCATTGCTG CGAATATCAT CACACAATAC CACGATACCA ACAGCGCCGC ATCCGCAGAA
GCCTTCTTTA TCAATCAGTT CCAGAACAAG TCCTTTGAAG AAAAGACCTT CGAACAGATC
GCCATTAACT CCTTCACTGA GGGAACAGCC ACCACCACCA CATTGCTGGA CCTCTGCCAA
CAACTAAAAA CGGACGAAAC CAGAAGCGGC ATCAGAAGGT TGATTATCAA TGGTGCAATC
ACTTTGGATA ATGAAAAATT GCTCGATCCC AATCAGCAAA TACATCTACG TCCAGGTATA
AAGATTAAGA TCGGCAGGCG ACTTTTCATA GAACTTATAT GA
|
|---|
| Protein sequence | MQTIIVNKIY HHSSLEPRTF NCPGLFYFYQ IMTTTTLPTA NAAVILPENG LTEKIRQAEK
DNRNLIIKLG FDPTAPDLHL GHAVVLKQLR AFQDLGHQVV IIVGSFTAQI GDPTGKNKSR
KPLSKEEVLA NADTYIRQLA KIIDTNKCQI LFNGTWLDKL SFPEILQLLS KVTVAQLLHR
NDFNKRFTEN VPIAMHELMY PILQGFDSVQ INADIEMGGT DQLFNCTMGR QLQEAHGLPP
QVVMCMPLLR GLDGKEKMSK SLNNIIGLTD TPNEMFGKTM SIPDHLIDEF IDLTTDFSPE
KKHALKQLMV SGENPMNIKK IIAANIITQY HDTNSAASAE AFFINQFQNK SFEEKTFEQI
AINSFTEGTA TTTTLLDLCQ QLKTDETRSG IRRLIINGAI TLDNEKLLDP NQQIHLRPGI
KIKIGRRLFI ELI
|
|---|
| |