| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4018 |
|---|
| Symbol | |
|---|
| ID | 8360191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4998486 |
|---|
| End bp | 4999847 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644966191 |
|---|
| Product | Chloride channel core |
|---|
| Protein accession | YP_003123680 |
|---|
| Protein GI | 256423027 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0038] Chloride channel protein EriC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.94873 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.248767 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCCTA CAAATAAACA TGGATCTTTC TGCGCATATC GGGAAGATAA TAAATTTGTA
TTTATTTGTA GGCTAATGAA ATATATCAAA CATTCTGTAG AACAACTGGC AATTGCTTAC
CAGCTTCTCC GCTGGACAAT TATCATCGTT CCTGTCTCTC TCATTGTAGG TTCTCTCGTG
GCTTTATTCT TATGGTTACT GGAAGAAGTA ACATTATTAC GCTGGCAGCA CGGCTGGTTG
CTTTTTCTAT TGCCCATAGC GGGGATATTG ATCCACTTTC TTTATAAAAA GCTGGGTGGT
ACATCAGAAG CAGGAAATAA CCTTATTATG GACGAGATCC ATGAACCCGG CGGAGGCGTA
CCTGCCCGCA TGGCGCCGTT GGTTATTGCG ACTACCATTA TCACTCATTT ATTTGGCGGA
TCCGCCGGAA GGGAAGGTAC CGCCGTGCAG ATAGGCGGTA GTATGGCACA TATGCTGGGT
CGCTGGTTCC GTTTGTCTGC CGCAGATGTA AAGATCATCC TCATGACGGG TATCGCTGCC
GGTTTCGGCG CTGTATTCGG TACACCGCTC ACAGGGGCTG TATTTGCCCT CGAAGTACTC
GCTATCGGTC TGATGCGTTA CGATGCCCTG ATCCCCTGTC TGATCGCCGC CGTATTCGCG
GATATCGTAT GTTCCGCCTG GGGCATCCAT CATACCCATT ATCAGATACT TTTTGAAAGC
AATCATATCT CCTTTCACTT CGTTCATTTC GACCTGCTCT TACTGATCAA AGTAATCGCC
TGTGGCATCG CTTTCGGTCT TGCCAGCTTT CTCTTCGCCA CCTGTATGCG AAATATCAAA
AGCTACGCGA AAGCATGGAT TAAAATCCCC TTACTGATCC CCGCTATCGG TGGCCTGATC
GTTATCGGCG GCTGCTACCT GCTGGGCACC CGCGATTATA TCGGACTCGG GGTTACCACA
CCCGATCCCA ACGGTGTCAG TATCGTCAAC GCTTTTACCA CAAAAGAGAT CTCGTCCTGG
GGATGGCTCT GGAAATTACT CCTGACAGCC ATCACACTCG GTATGGGGTT CAAAGGTGGA
GAAGTTACCC CACTGTTCTT TATCGGCGCC ACCTTAGGTC ATACACTCGC TGTTTTAATG
GGCGCACCGG TGGATTTGTT TGCAGGTCTC GGATTTATTG CCGTATTTGC AGGAGCCACC
AATACTCCCA TAGCGTGTAC GTTGATGGGG GTCGAACTTT TTGGCACAAC TCATGTGCTA
TATTTTGCTG TAGCGTGTTT CACCGCGTAT TATTTCAGCG GTCATGCGGG TATTTACAGT
GCGCAACGTA TAGCCGTACC AAAGAACCAT CATATTGACT AA
|
|---|
| Protein sequence | MAPTNKHGSF CAYREDNKFV FICRLMKYIK HSVEQLAIAY QLLRWTIIIV PVSLIVGSLV
ALFLWLLEEV TLLRWQHGWL LFLLPIAGIL IHFLYKKLGG TSEAGNNLIM DEIHEPGGGV
PARMAPLVIA TTIITHLFGG SAGREGTAVQ IGGSMAHMLG RWFRLSAADV KIILMTGIAA
GFGAVFGTPL TGAVFALEVL AIGLMRYDAL IPCLIAAVFA DIVCSAWGIH HTHYQILFES
NHISFHFVHF DLLLLIKVIA CGIAFGLASF LFATCMRNIK SYAKAWIKIP LLIPAIGGLI
VIGGCYLLGT RDYIGLGVTT PDPNGVSIVN AFTTKEISSW GWLWKLLLTA ITLGMGFKGG
EVTPLFFIGA TLGHTLAVLM GAPVDLFAGL GFIAVFAGAT NTPIACTLMG VELFGTTHVL
YFAVACFTAY YFSGHAGIYS AQRIAVPKNH HID
|
|---|
| |