Gene Cpin_4003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4003 
Symbol 
ID8360176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4982188 
End bp4982517 
Gene Length330 bp 
Protein Length109 aa 
Translation table11 
GC content47% 
IMG OID644966177 
Productsmall multidrug resistance protein 
Protein accessionYP_003123666 
Protein GI256423013 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG2076] Membrane transporters of cations and cationic drugs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000483781 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0171041 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTGGA TCATTCTGAT AATCGGCGGA CTATTCGAAG TAGGATTTAC TTTTAGCTTA 
GGGAAAGCAA AAGAGGCGAC AGGTAATACG GTATATTTCT GGTATGCCTG TTTTGCGGCC
TGTCTGACAT TGAGCATGTA TATGCTGATG AAGGCCACGC AGACCTTGCC CCTGGGTACC
GCTTATGCCG TATGGACGGG TATTGGCGCG GTAGGTACCG TATTGGTAGG TATCCTTGTA
TTTAAGGAGC CGGCTACCTT TCTGCGTGTA TTGTTCATTA CGACGCTGAT CGGCTCTATT
ATCGGCTTAA AAGTGGTTTC ACCGCACTAA
 
Protein sequence
MNWIILIIGG LFEVGFTFSL GKAKEATGNT VYFWYACFAA CLTLSMYMLM KATQTLPLGT 
AYAVWTGIGA VGTVLVGILV FKEPATFLRV LFITTLIGSI IGLKVVSPH