| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3982 |
|---|
| Symbol | |
|---|
| ID | 8360155 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 4954414 |
|---|
| End bp | 4955484 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644966156 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_003123645 |
|---|
| Protein GI | 256422992 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.870184 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATA TGCTCACCTT CTCACTGCTG GCCTCTTTTT CCTGCCTGGT AATATCCTGC
GGAGCGCCCA GTGCTGCTGA AAATAAAAAC GATAATAAAT CCGCCGATAT CCCGGTAAAA
CTGCTGCCGC TCAATGGCCA GCTGAATGCA CATCCCGCCA TCTCCGTATC CGGACAGTTT
ACCACAGATG ACGAAGTACT GCTCTCTTTC AAAACCGGCG GTATCATCCA ACGCATCCTG
GTAAAAGAAG GCGACGCCGT AAAACAAGGC CAGGTACTCG CTGTCCTGAA TCCGGTAGAG
ATCAACGCAC AGGTGCAACA GGCACAACTG GGCTTCGAAA AAGCACAACG TGACTACAAA
CGTGTAGATA ATTTATACAA GGATAGTGTA GCCACACTGG AACAGCTACA AAACGCCAAA
ACCGCGCTGG ATATAGCCGG TGAACAGGTT AAAACAGCAC AGTTCAATCG TACGCACTCA
CAGATCACCG CTACCGCCAG CGGTTACGTA CTCCGTAAAC TCGCCAGCGA AGGACAACTC
GTACAACCAG GTACTCCCGT ACTGGAAACC AACGGCGCAC AATCCGGCAA CTGGCTCCTG
CGTGTAAACG TAAGCAACAA AGAATGGGCA GCCATCAGTA TGCAGGACAG AGCCAATGTA
GAAGTAGAAG CTGTTCCCGG CAAAACCTTT CAGGGCAGCG TATCCCGTAA ATCTGAAGGT
ATACAGCCAC AGAGCGGTTC CTTTACTGCA GATATCAAAC TGACGGGAGA AAAACCTTCC
GCAATCGCAT TCGGCATGTT CGGTAAAGCA GTCATCACTC CTGTAACCGT AACCGCCACC
TCCGCCAATG GTCCATGGGC CATTCCTTAT GACGCCTTAC TGGAAGGCGA CGGTAACAAA
GGATTTGTCT TCATCACAAA CGATAATAAA ACCGTGCATA GAGTACCCGT AACCATCTCG
GGCATGGAAG CAGATAAAGT AATTATCAGC GATGGCCTTC AGCAAGCAGC TGCACTCATC
ATTTCCGGTA GCGCTTACCT CACCGAAGGC AGCTCCATCA ACGTTAAATA A
|
|---|
| Protein sequence | MKNMLTFSLL ASFSCLVISC GAPSAAENKN DNKSADIPVK LLPLNGQLNA HPAISVSGQF
TTDDEVLLSF KTGGIIQRIL VKEGDAVKQG QVLAVLNPVE INAQVQQAQL GFEKAQRDYK
RVDNLYKDSV ATLEQLQNAK TALDIAGEQV KTAQFNRTHS QITATASGYV LRKLASEGQL
VQPGTPVLET NGAQSGNWLL RVNVSNKEWA AISMQDRANV EVEAVPGKTF QGSVSRKSEG
IQPQSGSFTA DIKLTGEKPS AIAFGMFGKA VITPVTVTAT SANGPWAIPY DALLEGDGNK
GFVFITNDNK TVHRVPVTIS GMEADKVIIS DGLQQAAALI ISGSAYLTEG SSINVK
|
|---|
| |