| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3960 |
|---|
| Symbol | |
|---|
| ID | 8360133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4924749 |
|---|
| End bp | 4926173 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644966134 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003123623 |
|---|
| Protein GI | 256422970 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.268952 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0980193 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTA CATTGCTCAA AATATATACA CTGGCACTGG CGGCAGGACT TTTCTGTGCG
CTGCCTGCCT GTAAAAAAGG CTACCTGGAT ATTAACCAGA CCGATCCTAA TCTGACACAG
CGACCACCGA TTAATGGTCT GCTGGTGGCG ACTACGTACC AGTCAGCCAT TAATGTGTAT
TCCACTGGTT ATATCACTTC TTATTACGTA CAGCAGCTGG CATCTCCGAA TACCGGCAGT
GGCTCCGACA TATACGACGA TGTGGACAGG AGTGCCAACT GGCAAGCTAT CTATCTGAAT
GTGACGGATA TCCGTCAGAT GAAGCAACTG GCCCTGGCGC AGAAAGCTTA TGAGCATTTG
GGAGTAGCGG ACATCCTTGA GGCGCTGAAT ATGAGTATGG TGATCGATAT GTATGGAGAT
GCGCCTTACA GGGAAGCCTG GTCAGAAGGA GAAAACCTGC GGCCGGAATA TGATGGCGCA
AAGGTGATTT ATGACAGTTG CCTGTCCCTG ATCTATCAGG GAGTAGCTGC TTTGAATACC
CCGGACCCGC TGGTGGCATT AGACCCGGTA AATGACCTGG TACATGGTGG TAATAAGGCC
GCCTGGATAA AGACAGGTTA TGCACTGAAA GCAAGACTGC TGAACCGGAA GAGTAAACTG
CCGGATTATG ATGCGGCGGC TGTACTGGCA GCGCTGGAAC TGGCTTATGA CAGTAATGCC
GATGATGCCC AGATCACCCG TTTTGAGAGC CTGAGTCCCT GGAACAGCGT GGCAAAAAAT
AATGCCAGCG GGACCCTGGA TGGCTGGCTA AGCGCCACTT TTGTAAATGC GCTGAATGGG
ACAACTTATG GTGTATTTGA TCCCCGTTTA CCGCTTATAA CGGATACTAC CCGCTTTGGC
GATTACAGGG GGACGGTGAA CGGCGTCGGA CGTACTGGTT CCGGAACGGA TAACGCACAA
AGCGCCTTAT CGGTAAACGG GTTCTATTCC CGGGGCGGAG CACCTCTTTT GATGCTGACC
TATGCCGAGA TGAAGTTTAT CGAATCTGAG GCTTCTTTTG TGGCAAATAA GGCAGGATCT
TACCAGGCAT ACCTGGACGG TATTGCCGCA CATATGGATA AGTTAGGGGT AGCGCCTGCG
GCGAAACAGG CTTACGTAAG CAACCCGGTG GTAGCAGTGG GGCAGGCGGC GTTTACCAAA
GACCTGCTTT TTAAGGAGAA ATACGTAGCG ACGTTCCTGC AACCGGAAAC CTGGACAGAT
GCCCGTCGTT ATGACTATAA GTACAAGAAT TTCCAGTTAC CGCAGGGGGC TTTGTTAAAT
ACCTTCATCC GCCGGGTAGG ATATCCTACT TCCGAGACCA GCCGGAATCC GGAAAATGTG
CCGCCGGTAG GTTCATTGGC GGACCACTTA TGGTGGGACA AGTAA
|
|---|
| Protein sequence | MKRTLLKIYT LALAAGLFCA LPACKKGYLD INQTDPNLTQ RPPINGLLVA TTYQSAINVY
STGYITSYYV QQLASPNTGS GSDIYDDVDR SANWQAIYLN VTDIRQMKQL ALAQKAYEHL
GVADILEALN MSMVIDMYGD APYREAWSEG ENLRPEYDGA KVIYDSCLSL IYQGVAALNT
PDPLVALDPV NDLVHGGNKA AWIKTGYALK ARLLNRKSKL PDYDAAAVLA ALELAYDSNA
DDAQITRFES LSPWNSVAKN NASGTLDGWL SATFVNALNG TTYGVFDPRL PLITDTTRFG
DYRGTVNGVG RTGSGTDNAQ SALSVNGFYS RGGAPLLMLT YAEMKFIESE ASFVANKAGS
YQAYLDGIAA HMDKLGVAPA AKQAYVSNPV VAVGQAAFTK DLLFKEKYVA TFLQPETWTD
ARRYDYKYKN FQLPQGALLN TFIRRVGYPT SETSRNPENV PPVGSLADHL WWDK
|
|---|
| |