Gene Cpin_3919 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3919 
Symbol 
ID8360092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4868176 
End bp4870263 
Gene Length2088 bp 
Protein Length695 aa 
Translation table11 
GC content47% 
IMG OID644966093 
Productchitinase II 
Protein accessionYP_003123582 
Protein GI256422929 
COG category[R] General function prediction only 
COG ID[COG3858] Predicted glycosyl hydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00105192 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0100672 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACTCCC TTTTCAAAAA TATCACTGGG ATATTTTTGT TCCTTCTTAT CTTTTCATTT 
ACCGGGACGA AAATATACGC CAATGATGTA CATACCTACA GGTATGATAC CACGCAACCA
AAGACAATCA ATCTGCCGGC CTTCCAGAAA GACACCACAG GAAAGGTAAA ACTGCTGCAG
AAAATTGTTT CCGCGTTACA GTTCAGGCGA AATGCCCGGG CGCGTGAGCA ACAACGTGTG
ATCACCATCA TCAGAACGGT GATGGCCGAT TCCATGGTCG CCACCTCCGC AGATATCAAA
AAACTGAATG CTGAGTTATC ACTACAGCAG AACCAGCATT TTGATTCACT GCGTGCACTG
ATAGATAAGA TCATGTCGCG GCCCGAACCA ACACCTGCTC CAGACGATCC GGCAGAAGAA
GTAATCGATA CGCCCGTTGC GCCCGTTTCT GAAGCAGATG TCACAGCGCT CATTAACAAG
ATCATTCCCA TCCTGCAACA GAAAGAAGCA GAAGAAAGGA ACAGCGCCGC CCAGCAGCAA
AGATTACAGA AGGTCCGCGA ACTATACGGC CGCGACCCCG ATAAGATAGA TACGTTGCCC
GTCAATGACT CTATCGGCAA GACGTATACC TTACAATTAG GACATAAAGC GGCGGTTATC
GGCATCCATC CTTATTGGAT GAGCGATAAG TTTCTGCATT ACAATTATAC GACGATCAGT
GAGGCAAACT ATTACGGTTA TACGACTGCT GTAAACGCAA CCCGCATACC GGATTCACTA
CAGTTCTTCA ACCTGGCGAA TAACCGCACC TTCACTTTTT ATGAAACCGA TGCCTCCCGT
ATAGAAGCAT TGCTAAAGGA TGAAAGTTCA CAATTACACT GTGTAGACTC CCTCCTGCTT
TTATTAAGGC AATACCAGGC GGAAGGTGTG AATGTATGGC TGGCTGCATT GAATGGAAAA
CAAAGAACGG CCTTTACCCA TTTTATCGGT CTGCTGCATA ACAACCTGAA CATTGCCAAT
CCACAATACC GTTTAACGGT TACAGTGCCG CCGTTTGACG AAGCAGCGGC TTACGACCTG
CGGGCATTGA ACAGCTTTAC CACACATTTC CTGGTCGACT TTACAAAGGC CGGCGGAACA
GCTGCCGGAC CTCTGTCTCC CATGAAAGGA GATGCCCGGA GAGCGATTGA ACCAGTGATT
TCCCGCCTGC TAAATCAACA GATTCCGCCT GCTAAATTCA TCCTGCTCTT ATCTTATTAT
GGTACCGAAT GGAAGAAAGG CGCTGATGGC AGAGACCTGT TCACCCGCTA TGTTTCTTAC
AGCGATATCA AAAAACGATT CCCTTCCGAT ACCTCGGTGA ATTATGACGA AGATGCGGTA
GCAGCATTGA TCAGGGAGAA AGATGCACCG GGTACGGTGA CGTCGGAGAT CTGGTTTGAC
GATGCCAGTA CGCTTGACGT GAAATATGAC TTTATCCTGA ATATGGGTCT TGGCGGCGTG
GCAGTATGGC CACTGGGTGC AGATGATGGT TATGGAGAAT TATGGGATGT ACTGACAGAC
AAGTTTGTAA GCATCGATAC CACTTTCCTG GCAACGGTCC CGCTGGTTCC TCAGACGGAA
CCTACCTTGT CCTGGTGGGG CAGACTGGTA AAAAAGCTAC GCCATGAGGC ACATGTCCTG
AAGCTGATGT TTACGGATCC CTGTCAGCTG GATATTGAAA ACAGGCACGG ACATAACGAC
GATACCTTCT TTGTATGGCT TACAGTATTC CTGCTGATCA CTACACTGCT GATCGGGTTC
CTGTATGCAT ATAATCTAAG AATGAAGGGA ACTAGCTGGA AATGGAGAAA AATGATGCTC
CGTATACTGG TTGGGTCTGT ATTTGTAACG GCATTCTTTG CTATTGCGGC AGGATTTCTG
AACAGGGACG TTCCATTTGG TATTACGCCG AACATGAGTG CCGGGGCCAG ATGCGTCACC
ATCCCTATGC TGGATGCATT ACTGATCTTT GCCGCAGGTA TATGCCTTGG TATGCTGATT
ATGAGACTAC TGATACGTCC TTTACTGACA CACGAGGATA AGCCTTAA
 
Protein sequence
MYSLFKNITG IFLFLLIFSF TGTKIYANDV HTYRYDTTQP KTINLPAFQK DTTGKVKLLQ 
KIVSALQFRR NARAREQQRV ITIIRTVMAD SMVATSADIK KLNAELSLQQ NQHFDSLRAL
IDKIMSRPEP TPAPDDPAEE VIDTPVAPVS EADVTALINK IIPILQQKEA EERNSAAQQQ
RLQKVRELYG RDPDKIDTLP VNDSIGKTYT LQLGHKAAVI GIHPYWMSDK FLHYNYTTIS
EANYYGYTTA VNATRIPDSL QFFNLANNRT FTFYETDASR IEALLKDESS QLHCVDSLLL
LLRQYQAEGV NVWLAALNGK QRTAFTHFIG LLHNNLNIAN PQYRLTVTVP PFDEAAAYDL
RALNSFTTHF LVDFTKAGGT AAGPLSPMKG DARRAIEPVI SRLLNQQIPP AKFILLLSYY
GTEWKKGADG RDLFTRYVSY SDIKKRFPSD TSVNYDEDAV AALIREKDAP GTVTSEIWFD
DASTLDVKYD FILNMGLGGV AVWPLGADDG YGELWDVLTD KFVSIDTTFL ATVPLVPQTE
PTLSWWGRLV KKLRHEAHVL KLMFTDPCQL DIENRHGHND DTFFVWLTVF LLITTLLIGF
LYAYNLRMKG TSWKWRKMML RILVGSVFVT AFFAIAAGFL NRDVPFGITP NMSAGARCVT
IPMLDALLIF AAGICLGMLI MRLLIRPLLT HEDKP