| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3900 |
|---|
| Symbol | |
|---|
| ID | 8360073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4849940 |
|---|
| End bp | 4852840 |
|---|
| Gene Length | 2901 bp |
|---|
| Protein Length | 966 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644966074 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003123563 |
|---|
| Protein GI | 256422910 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0419] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.048265 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGCA ACGCAGGACT AAATATTCAG ATCGGGGCAA CCGTTACGGC GCTGAATAAT
GCGTTGAATG CCGCTATCAA TGGAATAACT AATTTCAGTA ACACAGTAAA TAGGTTATCT
CCACAGTCTG GTGCCGCCGC AGCTGGCATT ACGAATTTAG CCAATGCGGT CAACAGTGGT
GCAGCGTCAT TCAATTACTT GAGTGGGTCT GCAATTAATG CTAATAGTGC CATTAATAAT
ACAACGAACG CAGTAAATGG ACTATCTCCT GTCACAGGAG CAGCTGCTGC GGGAATAACA
AATCTTGCTA ATGCTATAAA CACCGGTAAC GCGTCGTTCG TCAGTCTCAG TAACACAGCC
TCTCAGGCTT CAGCAAATAT TAGTGGCACG TCCACCAGCA TTAATAATCT TTCGCCTATA
ACAAGTGCAG CTGCTGCTGG TATCACAAAC TTGGCGAATG CTATTCAAAA TGGGCAGGCG
TCATTTATTA ATCTCGGCAA TGCCGCAACG CAGGCTAACA ACTCATTACA AAATACTAAT
AGTACTGCAC AGCGCTCAGG GGCATCCTTT AACGCTGTGA TCCTTGATTA TTACTCTGCC
GCCGGTGCCC TGAACCGGCT GTCCCCAGCA ACTACTGCTG CGGCTTTAGG GATAACCAAT
CTTGGTGCTG CATTTTCAAA CAGTAGAGCA AGTATAAGGT CGTTTTATAC CGGTTATGCC
AGTGATATTC AAGGGTTAAC AAGGAATACA CAGGATGTAG TTAATACGTT CGGCCGGCTG
CCACTAGCGA CAAGTGCCAC GTCTGTGGGA ATCACGAATC TGACTAGGGC CGTAAATTCT
GGAAATGCCT CACTTGTAGG CATGAGTCGT ACTGCTCAGT ATGCAGTCCA GGCAAACGCG
AGGCTTGCTA CATCAACTCA AAGTTTGGTT AGGCCAGCAG CTAATGCAAC GGGAGCTATA
GCTGGATTAA ACAACATTAT CCGAGATGCG CCGTTCGGTG TAATCGGTAT TGGTAACAAC
ATTACCCAGT TAATAGACGC TTTCGGTCAG TTGCAGCGTC AAACAGGTAG CACTGGTGCG
GCGTTACGCA CACTTGCCGG TTCTGTGTTT GGTCCCGCAG GTATATTCAC ATTGGGGTTA
TCTGCTGCAA TATCTTTATG GACTGTGTAC TCAATGAGGC AATCCCAGGC CAAATCCAAG
GCAGAGGAGG CAGCCAAGGC TATAAAAACA ACAGGCCAAG TTATAAAAGA GGCGGCAGCT
ACCCTGCAAC AGTATAATGC AGAAGCCCTT GGGGAGATAG CAACTCTTAA TCGTCTATTT
GAAATAGCAA CTGATGATGT GAGGTCCAGG AAGGACAGGG TGGCAGCCCT AAAAGAACTG
AAGAAGCAGA CAAATGGTTA TCTTGACGAT CTTAAACTTG AGACGCTTCA GACCGATGCT
GCTAGGAAGG CTTTAGATGA ATATAATGCA TCGTTATTCA ACTCTGCACT GATAAAAGCG
TATCAAGGGC AACTCGAAGA GCTTGCGAAA GTCTATGCAT TCAATAAAGA TAATGCAGAC
AAGGCTCGTA AGGCATTAGA TGAATTTGAT GCAGCACAAA TCAGGCAACG TAAGCGTATT
CAAAACGGAC AGTTGACTGG TAGGCAAATC GATGAAGCGC AGTCAAAAAT AATGGCCAAT
GAAGCAGCAA GGGCAAAATT GGTTGAAAAT ACCAACGGCT TCATAAATAA GCAAAATCAA
GCGTACGACG AAATACTAAA TACGGGTAAG AAGATAGCTG ATCTGCAAGT TAAGGTAAAT
CCTTTTGGTA AGCAGGATGC AGACACCAAA AGTGCGGGAG AGTCAATCTC TAAGGTTCTG
GAAATAATGA ATGCACAATT GGCGGCATCT GACGCTCAGT TTAAAAATAC AGGAGGAGCA
CTTGACTTCC TTGCAAAGGA TAAGATACAA ATCCTTCAGT CAGCTTTTGA TAAGCTTGTG
AACTTGGGTC TTAAGCCCAC ATCTCCTGAG CTGGAGAATA TACAGAAGCA TATCAATGAT
CTTGAGGGTA GCATTATTGG CAAGCAGGAT TTATTCGGTG CTCAACTTTT CAATTTTGAT
GGCAAGTCAA TTATAACTGC AGAAGAACAA ATAATTAGCC TTCGGCAGCA GATGGAGTCA
TTAAAAAAGT TGGGCGTTGA TCCAGCAAGC AACAGCTTTA AAGAACTTAG TAAAAAGTAT
GATTCCTTGA CTGCTAAAAC GAGCAGTTCG GCTTTATTCG ATACAAGCAG CTTTAGGTTA
GTTAACGGTC AGCTACAAGC AATTAATACA TCCTTAGTAA ATGCAGCCAC TGCGCAACAA
AGGTTTAATA ACACGGTTTC GGATTTGTCT GATAAATATG CTGCCAGTAA GTTAAAGTTA
GAGGCGTTCC TTGCGACAAT CAATGACTCT TTTCAGAGTC TAGCATTAGA TATTGCCGGT
TCTTTAGGAG ACGCAATAGC TGGCGCCTTT ATGGGGAATG GATTTAAGGG AGCCATACAA
TCGTTTGCTG GAATATTTGG TTCTTACTTG CAAAGTCTTG GTAAGCAATT AATTGCTTAT
AGCGGGATAT TAAAGGGAGT GCAGATTGCA ATTAAGACTT TCAGCCCAGT AGCTGCCGCA
GTAGCAGGGG CTGCAGCGCT TGTAGCTGGC AGCGCTCTTA AAGCCTATGC TTCTAAGGTG
CCATCTTTCG CCACTGGCGG TGTTGTAACA GAGCCTACCC TTGCAATGGT GGGCGATAAC
CCAGGTAGAA AGGAAGCGAT TATTCCATCA GAGTTATGGG ACAAAATAGG CGGTGGCGGT
TTTGGTATCG CTAGTATAGA CTTCGACTAC GATAAATTGA GGATAAGAAT TGACCAGTCG
CGCAGGAGGG GCGGATACTG A
|
|---|
| Protein sequence | MASNAGLNIQ IGATVTALNN ALNAAINGIT NFSNTVNRLS PQSGAAAAGI TNLANAVNSG
AASFNYLSGS AINANSAINN TTNAVNGLSP VTGAAAAGIT NLANAINTGN ASFVSLSNTA
SQASANISGT STSINNLSPI TSAAAAGITN LANAIQNGQA SFINLGNAAT QANNSLQNTN
STAQRSGASF NAVILDYYSA AGALNRLSPA TTAAALGITN LGAAFSNSRA SIRSFYTGYA
SDIQGLTRNT QDVVNTFGRL PLATSATSVG ITNLTRAVNS GNASLVGMSR TAQYAVQANA
RLATSTQSLV RPAANATGAI AGLNNIIRDA PFGVIGIGNN ITQLIDAFGQ LQRQTGSTGA
ALRTLAGSVF GPAGIFTLGL SAAISLWTVY SMRQSQAKSK AEEAAKAIKT TGQVIKEAAA
TLQQYNAEAL GEIATLNRLF EIATDDVRSR KDRVAALKEL KKQTNGYLDD LKLETLQTDA
ARKALDEYNA SLFNSALIKA YQGQLEELAK VYAFNKDNAD KARKALDEFD AAQIRQRKRI
QNGQLTGRQI DEAQSKIMAN EAARAKLVEN TNGFINKQNQ AYDEILNTGK KIADLQVKVN
PFGKQDADTK SAGESISKVL EIMNAQLAAS DAQFKNTGGA LDFLAKDKIQ ILQSAFDKLV
NLGLKPTSPE LENIQKHIND LEGSIIGKQD LFGAQLFNFD GKSIITAEEQ IISLRQQMES
LKKLGVDPAS NSFKELSKKY DSLTAKTSSS ALFDTSSFRL VNGQLQAINT SLVNAATAQQ
RFNNTVSDLS DKYAASKLKL EAFLATINDS FQSLALDIAG SLGDAIAGAF MGNGFKGAIQ
SFAGIFGSYL QSLGKQLIAY SGILKGVQIA IKTFSPVAAA VAGAAALVAG SALKAYASKV
PSFATGGVVT EPTLAMVGDN PGRKEAIIPS ELWDKIGGGG FGIASIDFDY DKLRIRIDQS
RRRGGY
|
|---|
| |