Gene Cpin_3808 details

Gene Information

• Locus tag: Cpin_3808
• ID: 8359980
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chitinophaga pinensis DSM 2588
• Kingdom: Bacteria
• Replicon accession: NC_013132
• Strand: +
• Start bp: 4789024
• End bp: 4792407
• Gene Length: 3384 bp
• Protein Length: 1127 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 644965981
• Product: TonB-dependent receptor plug
• Protein accession: YP_003123471
• Protein GI: 256422818

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.0159841
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 26
• Fosmid unclonability p-value: 0.577345
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGGAAT TTTATGTACG TCATATGCGA CTTCAGGAGA AATATGCCAG CATCCTATAT 
CTGTTGCTGC TTTTTTCGTC ATTGTTGCTT ACTGAAGGCG TTCGTGCACA GCATAGCTCT 
ATGCTGGACG GTAAGTTTGT GTCTGTCACT ATCAGGCGGC AGCCACTGTC AGCTATTTTG 
GACACATTAC AGGCAAAGAC GGGTGTTTTA TTGAATAGTT CTCTCAACGG GGAAGAGATA 
TATAGTATAG ATGTAAATAA TAAATCACTG CGCTTTACCC TGGAAAAGCT ATTTCGGAAA 
AAACAGGTAA AGGTGCAGGA GCTGGTAAAC CTTAATATGG TCAAGATCCA GCCGCGCGAG 
ACGGCAGATA AAATGGACAA AAATGCTGAT ACCGGTAAGT CTTTATCACC GGATGTACCC 
GTTAACGTTT TACATTATCG TATAACGGGC CAGGTGATTG ACGAGGATGG CCTTCCACTA 
CCGGGCGCTA GTATTCAGGT GAAAGGAAAA AAAGAAGGGG CGGGTTCAGA TACCGCAGGA 
AACTTCACTT TCCTCTCCAC AGCAGCGAAG CCGCATGTAA TGGTCACTTT TATGGGATAT 
GAGGGACAGG AGCGTCAGCT GCAGACCGGT CAGAAAGAAG TAATTATTCT CAGACAGGCG 
GATAACAGCC TGGATGGGGT AACGGTAGTA GGGTATATGG ATAACTCAAA CAGGTACTCT 
TCCGGTTCCG TATCCAAGGT AACGGCGAAG GACATTGAAG GCAGTGTCAC CGGCAATCCG 
CTTTTGTCCA TACAGGGACG CATACCCGGT ATGGTGATCA CACAATCCAG CGGTGTGACC 
GGCGCTGCCA TTAAAGTAAA TCTCCGGGGC ATCAACTCAC TATTCAACGG GTCTGATCCT 
TTATATATTG TGAACGGTAC ACAGTTGCCC GGTTATGGGG AGCAGATCAA TCAGCTGCCT 
TCCATTGCCT CCCAGAATGA GGATGGCGGT ATAAGTCCGT TTACCATCTT CGGGCTATAT 
GATATTGAAT CCATGTATAT CCTGAAAGAT GCGGTCGCGA CTGCTGCCTA TGGTAGCAGA 
GGAGCTAACG GCGTGGTGAT TATTAATACG AAAAAAGGAG AAAAAGGGAA GCTGAAAGTC 
ACGGTGGATT ATATGTACGG CCTCAACAGC GTCTCCCGCA AATTATCCCT GCTGAATACG 
CAACAGTACA TCAGTATGCG GAAGGAGGCA TTCCGGAATG ATACAATTGA TCCTAATAGT 
ATGCCCGGAA CGCCTGGTTA TGCGCCGGAT CTTACCTTGT GGGATACGAC CCGGTATACA 
GACTGGCAGA AAATGCTGAG AGGCAGACTG GCCGGCATGA ATGACCTGAA CATCAGCATC 
TCCGGTGGCA CCAAGTATAC AAGATTGTTA CTGAGTACGG GTATCTACCG GGAAGGGACC 
GTTTATTCGA AAGATATGTC CTATCTGCGT AGTACCATCA ATCTGGCGGC AGATCATCAG 
TCTAAAGACG GGCGGTTTAA ACTGGGCGTA TATGCGAACT ATTCCGTAGA TAACAACCAA 
TTGTTCAGTC CAACGTCTTC GGGAGAAACG TTAGCGCCGA ATGCGCCAAA GCCTTATGAT 
GCGCATCATA ACCTGGTGTG GCAGGAAGGC GGAGAGTCTT TTGCCAATCC CATGGCGGAA 
AGACTGAAGC GCTATTCCAT GGTCAAGAAT AACCTGATCG TGAATGTGAC ACCTTCTTAC 
GAGATCCTGC CTGATCTGCG CCTGAAAGCC AATATCGGTC TGACAGGCGT CAACGTATAC 
GAAAACAGCT TATTACCTAT CGCGTCCCAG AATCCCTACA CCGATAGTAC GGTTACCGGT 
AGCGCTTCTT TTGCTACCGG TAAGTATAAA AGTCTGATGT TCGACCCTGT ACTGGAGTTT 
AAAAAGCATC TCAAACAGGG CGATTTTACT TTATTGAGTG GTTATTCATT TCAACATGCG 
ACCTCTGATA TTTCGTCCGT TACCGGATAT GGATATACCG ATGATGTATA CCTCCGTTTT 
CTTGACCGGG CGCCGCTAAA GAACAATAAT TTTACGCCGG AATCGAGTCA GTACAGGTAT 
GGCGCTTTCT TTACGCAGTT CAACTATAAA TACAATCAGA CCTATATTCT TGATATGACT 
TTCCGCCGGG ATGGTAGTAG TAAGTTCAGT CCGGAGCGCC GTTTTGGTAA TTTCTGGGCA 
ACCGGCGTCG CATGGATCTT TTCAAAAGAA AAGTTCTTTC AGCCGCTGAA CAGTTTTGTG 
CGCTATGGTA AACTACGCAG TAGTATTGGT GTCACCGGTA ATGATAAAAT TGAAAACTAT 
AAGTATCTTG ATACCTGGTC GCCTGTATCC GGCGGACCTT ACCAGGGTAC ATCCGGACTC 
AGACCCGATG CATTGTATAA TCCTGCCTAT TCCTGGGAAA CCTGCCGTAA AATAGAATTC 
GGACTGGACC TGGAGTTTAC ACCGGTGGAT ATGTATATGT CGCTGGTGTA TTTTACCAAC 
CGCAGCTCCA ATCAGCTGGT GAGGTATAAT CTGCCTTCAC AGACAGGTTT TAGCGATATT 
CTGAAGAATA TAGATGCTGC TATCCGAAAC AGTGGCTGGG AGTTTACGTT CGATGCCACA 
ATTGTCAAAA GCGGCGATTT TAAGCTGTTT ACAGGCGTTA ATCTGACCGT GCCGAGAAGT 
AGGCTACTCC GCTTTGAAAA GTTGTCTACA TCTGCTTATT ATGGCTCTTA CGTGATTGGT 
AAGTCAGTGA AGGTGCTCAA TAAATTACAT GTAGATGGGG TAGATCCTGC AACAGGTCTT 
TTTATCATTC AGGACAGGGA CGGCGCCAAT GGCTACACTG TCAATGATTA CCAGGTAATA 
GGTCATCTGG ATCCTTACTG GTTCGGCGGA TTTCGCCTGG GGGTGAGCTG GAAGGCATTT 
GAACTGAACC TGCTGGGCGA TTTCAGAAAA CAGATGGCTC CCAACTATCT GTATGCGACT 
TATATCAGAA ATGCGCTTCC AGGAGCGGCG GTTAATCAAG CTACAGAAGT ACTTGACCGC 
TGGAGTCAAT ATGGCGATAA TGCTATTTAC CCGAGATTTT CCACGATGTC CGGCGGAGAT 
GTATATAGCG ATCGTACCCG TATTATTAAC TCTGACAAGG CGTATTCAGA CGCCACTTTC 
ATGAAACTGA GAAACGTTTA CATCTATTAT ACATTGCCTG CTCGTTTGTT TTCAAAGTTA 
AAACTGGAGA ATATCAGGAT CTATTGCAAG GCACAGCATC TATTCACTAT TACGCGGTAT 
AAGGCGGGTG ATCCTGAAAC TGCGAGTCCG TTTGCGCTGC CTCCGCTAAG AACGGTGGCG 
ATGGGCGTAA GGGCGTCTTT TTAA 

 

Protein sequence

MKEFYVRHMR LQEKYASILY LLLLFSSLLL TEGVRAQHSS MLDGKFVSVT IRRQPLSAIL 
DTLQAKTGVL LNSSLNGEEI YSIDVNNKSL RFTLEKLFRK KQVKVQELVN LNMVKIQPRE 
TADKMDKNAD TGKSLSPDVP VNVLHYRITG QVIDEDGLPL PGASIQVKGK KEGAGSDTAG 
NFTFLSTAAK PHVMVTFMGY EGQERQLQTG QKEVIILRQA DNSLDGVTVV GYMDNSNRYS 
SGSVSKVTAK DIEGSVTGNP LLSIQGRIPG MVITQSSGVT GAAIKVNLRG INSLFNGSDP 
LYIVNGTQLP GYGEQINQLP SIASQNEDGG ISPFTIFGLY DIESMYILKD AVATAAYGSR 
GANGVVIINT KKGEKGKLKV TVDYMYGLNS VSRKLSLLNT QQYISMRKEA FRNDTIDPNS 
MPGTPGYAPD LTLWDTTRYT DWQKMLRGRL AGMNDLNISI SGGTKYTRLL LSTGIYREGT 
VYSKDMSYLR STINLAADHQ SKDGRFKLGV YANYSVDNNQ LFSPTSSGET LAPNAPKPYD 
AHHNLVWQEG GESFANPMAE RLKRYSMVKN NLIVNVTPSY EILPDLRLKA NIGLTGVNVY 
ENSLLPIASQ NPYTDSTVTG SASFATGKYK SLMFDPVLEF KKHLKQGDFT LLSGYSFQHA 
TSDISSVTGY GYTDDVYLRF LDRAPLKNNN FTPESSQYRY GAFFTQFNYK YNQTYILDMT 
FRRDGSSKFS PERRFGNFWA TGVAWIFSKE KFFQPLNSFV RYGKLRSSIG VTGNDKIENY 
KYLDTWSPVS GGPYQGTSGL RPDALYNPAY SWETCRKIEF GLDLEFTPVD MYMSLVYFTN 
RSSNQLVRYN LPSQTGFSDI LKNIDAAIRN SGWEFTFDAT IVKSGDFKLF TGVNLTVPRS 
RLLRFEKLST SAYYGSYVIG KSVKVLNKLH VDGVDPATGL FIIQDRDGAN GYTVNDYQVI 
GHLDPYWFGG FRLGVSWKAF ELNLLGDFRK QMAPNYLYAT YIRNALPGAA VNQATEVLDR 
WSQYGDNAIY PRFSTMSGGD VYSDRTRIIN SDKAYSDATF MKLRNVYIYY TLPARLFSKL 
KLENIRIYCK AQHLFTITRY KAGDPETASP FALPPLRTVA MGVRASF