| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3770 |
|---|
| Symbol | |
|---|
| ID | 8359938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 4747747 |
|---|
| End bp | 4748220 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644965939 |
|---|
| Product | protein of unknown function DUF163 |
|---|
| Protein accession | YP_003123433 |
|---|
| Protein GI | 256422780 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1576] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00246] rRNA large subunit m3Psi methyltransferase RlmH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0717595 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAATAC AACTCTGGAG TATAGGAAAA GAGAATGACC CATATATAAG GGACGGTATT
GCTATCTTTC AAAAGCGACT GCAACATTAT GTCGACTTTG AACTAAAGCT GATCCCGACC
GTGAAACAGG CCGCCAGTCT CTCCGTGCCG GAACTGAAAA AACAGGAAGG TAAAATGATA
CTGGATATGC TGCAACCACA GGATTACCTG GTAGCCTTGG ATGAATATGG GAAAATGCAG
ACAACCATGC AACTGGCTGA TTTCATCCAG CAACGTGCCA ATGCAGCAAC CCGGCAGGTG
ATATTCCTGA TTGGTGGCGC TTTCGGACTG GATACTGCCG TCCTGGAAAG AGCACAACTT
AAATTATCGC TGTCCCCCCT CACCTTCCCG CACCAGCTGG TGAGACTGAT CATGACCGAA
CAACTCTACC GGGCCTATAC GGTCATTAAC CGGGAGAAAT ATCATCATCA GTAA
|
|---|
| Protein sequence | MKIQLWSIGK ENDPYIRDGI AIFQKRLQHY VDFELKLIPT VKQAASLSVP ELKKQEGKMI
LDMLQPQDYL VALDEYGKMQ TTMQLADFIQ QRANAATRQV IFLIGGAFGL DTAVLERAQL
KLSLSPLTFP HQLVRLIMTE QLYRAYTVIN REKYHHQ
|
|---|
| |