| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3671 |
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| Symbol | |
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| ID | 8359838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 4606855 |
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| End bp | 4608972 |
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| Gene Length | 2118 bp |
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| Protein Length | 705 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644965840 |
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| Product | ribonuclease R |
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| Protein accession | YP_003123334 |
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| Protein GI | 256422681 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0988555 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.127593 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAAAA AGAAAAAACC TCAAAAACAC AGTAGCCAGA AGAAAACCTT CAGGGGTACT
GTTCAGATAA CCCGCTCCGG GATGTCCTTT GTAATTATCG AAGGACAGGA GAAGGATGTA
ATGGTCCGCC AGAAAAATCT CAACACCGCG CTTGACGGGG ATGAAGTGCT TGTCGATGTC
ATCAAACAGG GCAAGAACGA AGGCCGTATG GAAGGTGTGA TAACGGAGAT CATTAAACGC
AAAAAGATCG AATTCACCGG TAGTCTGCAG GTCAACAAAG GCTTTGCCTT CCTGATACCT
GAGAAAGGGC TGTTCATGCC TGATATATAT ATTCCTGCCA ATTCCCTGAA GGATGCGAAA
AACGGCGATA AGGCTGTGGT GCGTGTAGTA GCCTGGGGCG AAAAGACCCG CAAGCCGGTA
GGGGAAGTCG TGGAAGTGCT GGATGCCAGC AATACCAACG ACCTGGCTAT GAAAGAGATC
CTGATTGAAA GCGGATTCCC GCTCAGTTTC CCGGACGAAG TGTTGAAAGA ACTGAATGAG
ATCCAGGAGA ACATTGATGC GGAAGAAGTA AAGAAACGTA AGGATTTTCG TAAGACCCTC
ACCTTCACCA TTGACCCGGT GGATGCGAAG GATTTCGATG ATGCCATTTC CATCCGCAAA
CTGCGTGGTA ACTGGTACGA AGTAGGAGTG CATATCGCTG ACGTCAGCCA TTATGTGCAG
CCGGATACCG CTCTCGATAA AGAGGCCGAT AAACGTGCTA CCTCTGTTTA CCTGCCGGAC
CGCGTATTGC CGATGCTGCC GGAAAAGATC TCCAATGAGC TCTGTTCCCT GCGTCCGCAT
GAAGATAAAC TGACTTTCTC TGCTGTGTTC AAGATGAATG ACAAAGGAGA GATCAAGGAA
AACTGGATCG GCCGTACCGT GATTCATTCC GATCACCGTT TCACTTACGA ACAGGTGCAG
GAGGTGATTG AAACAGGAGA GGGTCCTTAT AAAGACGAGG TACTGTTGCT GAATAAGATC
TCCCAGACAC TGCGTAAGGT GCGTTTTGAG AATGGTGCGA TCAACTTCTC CTCCCAGGAG
GTTCGTTTCC AGCTGGATGA AAACGCGAAG CCGATAGGCA TCGTGATCAA GGAAAGCAAG
GAAGCGCATC AGCTGATCGA GGAACTGATG TTGCTGGCTA ACAGAACCGT TGCGGAATAT
GTATATAATA TCCGTATCGG TACTAATCAG CATGTGCCAT TCCCATACCG TGTACACGAT
ACACCGGACG AGGAAAAACT GAAAATGTTC TCCGCTTTTG CCCGTAAGTT CGGTCATAAG
CTGGAAGTCG ATAACCTGGA GAAACTGGCG CGCTCCTTCA ACGAAATGTT GCAGCTGGCG
CACGGTAAAC CGGAACAGCA TGTGCTGGAA ACCCTGGGTA TCCGTACAAT GGCGAAAGCG
GCTTATACGA CAGATGATAT CGGTCACTAC GGACTGGGCT TCGAACACTA TTGTCACTTT
ACTTCACCGA TCCGTCGTTA TCCGGACGTA CTGGTACATC GTGTATTACA GCAATGCCTG
TCCCACGATA TCCATCCGGA CAAACAGATG GAAAAGAAAT GTAAGCACTC TTCCGAAATG
GAACGTAAAG CCATGGAAGC GGAAAGAGCG GCTAACAAAT ACAAGCAGGT GGAATACATG
CAGCAGTACA TCGGAGAGGA ATTCGACGGT GTGGTAAGCG GTGTAGCGCA CTTCGGTTTC
TGGGTGGAAA CGGTAGATAC CAAATGCGAA GGATTGGTAA GTATCCATAG CATGAGCACC
AAAGACGAGT TTGTCTACGA TGAGCAGGAA TATTCCCTGG TGGGTTCGTT CACCGGCAGA
AAGATCCGTA TAGGTGATAA AGTGAGAATA CAGGTAGTAG CTGCCAACCT GGTAAAACGC
CAGCTGGACT ATGACCTGGT AGAGCCGGAA GGCAGTGCTC CCGATATATT CGCCGGCGGA
AGAGGAAGAT CAGCACGTAA ACCTGCTACC GACAAGAAAA CCTCCAGAGC GCCGAAAGAC
AAAAAGAAAG AAACCAGTTC GAAGAAGAAA CCTGCTTCCG GAAAGAAGCC AGGTTCCTCT
TCCCGTAAAA AGTCATAA
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| Protein sequence | MTKKKKPQKH SSQKKTFRGT VQITRSGMSF VIIEGQEKDV MVRQKNLNTA LDGDEVLVDV
IKQGKNEGRM EGVITEIIKR KKIEFTGSLQ VNKGFAFLIP EKGLFMPDIY IPANSLKDAK
NGDKAVVRVV AWGEKTRKPV GEVVEVLDAS NTNDLAMKEI LIESGFPLSF PDEVLKELNE
IQENIDAEEV KKRKDFRKTL TFTIDPVDAK DFDDAISIRK LRGNWYEVGV HIADVSHYVQ
PDTALDKEAD KRATSVYLPD RVLPMLPEKI SNELCSLRPH EDKLTFSAVF KMNDKGEIKE
NWIGRTVIHS DHRFTYEQVQ EVIETGEGPY KDEVLLLNKI SQTLRKVRFE NGAINFSSQE
VRFQLDENAK PIGIVIKESK EAHQLIEELM LLANRTVAEY VYNIRIGTNQ HVPFPYRVHD
TPDEEKLKMF SAFARKFGHK LEVDNLEKLA RSFNEMLQLA HGKPEQHVLE TLGIRTMAKA
AYTTDDIGHY GLGFEHYCHF TSPIRRYPDV LVHRVLQQCL SHDIHPDKQM EKKCKHSSEM
ERKAMEAERA ANKYKQVEYM QQYIGEEFDG VVSGVAHFGF WVETVDTKCE GLVSIHSMST
KDEFVYDEQE YSLVGSFTGR KIRIGDKVRI QVVAANLVKR QLDYDLVEPE GSAPDIFAGG
RGRSARKPAT DKKTSRAPKD KKKETSSKKK PASGKKPGSS SRKKS
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