Gene Cpin_3528 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3528 
Symbol 
ID8359695 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4393646 
End bp4394878 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content45% 
IMG OID644965699 
Productsodium/hydrogen exchanger 
Protein accessionYP_003123193 
Protein GI256422540 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0025] NhaP-type Na+/H+ and K+/H+ antiporters 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.339739 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.944351 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATACAT TTACAATCAT TACAGCTCTG ATCACAATAA GCGCATTGAT TTCCTACATT 
AATCTTCGAT TTATCAAACT GCCTGGTGCC ATCGGCGTAA TGTTTGTATC TATCCTGCTG
TCCGTATTTA TACTGGTGAC GGGTAAGGCA TTTCCGGTTG CATTCAACTT TATCCGTGAG
CTTACCGAGA GCATTGACTT TACAAAAACG CTCCTGGATG TCATGCTGGC CTTCCTCTTA
TTTGCCAGTG CTTTTCACTT TGAGTATAAA AAGCTGAAGG AGCAGAAACG TCCGGTGTTG
GTACTCAGTA CAATTGGTGT GGTCGGCTCC ACTGTTATCT TCGGATTCCT GCTGGATATC
ACCACTACCC TGCTGGGTAT AGATCTGCCA CTAGTGTATT GTTTCCTTTT TGGTGCATTG
ATTTCACCTA CTGACCCTGT GGCGGTATTG TCTGTGCTGA AAAAATCCAG GATTCCGCAG
TCGCTGGAAA CAATTATTTC AGGTGAATCC TTATTGAATG ATGGGGTTGG TCTGATTCTC
TTTATTACGA TTGGCGAAGT AGCCGCACAG CAAGCTGCTT TCTCCTTTAC ACATGCGTTG
GAGCTATTTG CTATAGAGGT ATTTGGCGGT CTGGCCCTGG GTACTGCGGT CGCTTTTGTG
ACGGGTTATC TGACAAAGAA AATACAGGAA TTCCAGACAG CGATACTGGT ATCCATCTCT
ATGGTAATGG CGATATCTGT ACTGGGAAGT CTGTTACATG TATCTATACC ATTGGCGGCG
GTCGCTGCGG GCCTGATCCT TGGCAACACT TCTATCGGCG CCAAGACAAA TACAGAATTA
CAGAATTACC TGCATCAGTT CTGGGAGCTG ATAGACGAAT TACTCAACAT TATCCTGTTT
GTGATGATTG GTTTGCAGAT CGTGGTACTG CCTTTCATCG GCAATTACTG GTTCATTGGT
ATGGTATCCG TATTGTTTGT ACTGGTGGCC AGAGGGGTGA GTATAGCAGT GCCTGCATTG
GCATTACGCC GGTCTTTAAA GACGACATTC AGCACAACTG CGATCTTGGT ATGGGCAGGA
TTGAGGGGCG GTATTTCGGT GGCGCTGGCA CTGTCACTCC CGGATTCTCC TTATAAGGAA
TTAATATTAT CAGCGAGCTA TATTATCGTG ATCTTCTCCG TGATTGTACA GGGGCTAACC
CTGAACAAGG TCGTAGACAG GTTCATCGAT TAA
 
Protein sequence
MDTFTIITAL ITISALISYI NLRFIKLPGA IGVMFVSILL SVFILVTGKA FPVAFNFIRE 
LTESIDFTKT LLDVMLAFLL FASAFHFEYK KLKEQKRPVL VLSTIGVVGS TVIFGFLLDI
TTTLLGIDLP LVYCFLFGAL ISPTDPVAVL SVLKKSRIPQ SLETIISGES LLNDGVGLIL
FITIGEVAAQ QAAFSFTHAL ELFAIEVFGG LALGTAVAFV TGYLTKKIQE FQTAILVSIS
MVMAISVLGS LLHVSIPLAA VAAGLILGNT SIGAKTNTEL QNYLHQFWEL IDELLNIILF
VMIGLQIVVL PFIGNYWFIG MVSVLFVLVA RGVSIAVPAL ALRRSLKTTF STTAILVWAG
LRGGISVALA LSLPDSPYKE LILSASYIIV IFSVIVQGLT LNKVVDRFID