| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3310 |
|---|
| Symbol | |
|---|
| ID | 8359476 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 4074436 |
|---|
| End bp | 4075272 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644965483 |
|---|
| Product | protein of unknown function DUF81 |
|---|
| Protein accession | YP_003122978 |
|---|
| Protein GI | 256422325 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0730] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.251637 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.000195256 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATTC TGGTATTCAC ACTCATTCTG CTGGTAGGCG CCTTCACGGC GGGTATGCTG
GGATCTCTCA CCGGTCTCGG TGGAGGGGTC GTATTAATCC CTTTACTTAC ACTCGTATTT
CATGTCGATA TCCGATATGC GGTGGGCGCT TCTCTTGTAG CATCCATTGC TAATTCTTCC
GGTGCCGCAG CGGCGTATAT CAAAGAAGGT ATCACCAACG TGCGTATCGG TATGTTCCTC
GAAATAGCCA CCACCACAGG CGCTATAATC GGCGCTGTAC TGGCGGTATA TACACCGACG
CATCTGGTTG CGATCCTCTT TGGATTTGTC CTGCTGTTTT CTGCTGCCAT GACGCTCAGA
AAAAAGAACG AACACGGCGA CAACGAAAGC AACAGTAAAC TGGCCCGCAT CATGCGTCTC
AACAACTCCT ACCCTGTCAA TGGTGTAGAA GTCCCTTATA AAGTAAGAGG CGTTGCAGGT
GGTTATGCAT TGATGACCGT AGCAGGTGTG GTATCCGGAT TACTGGGTAT CGGTTCCGGC
GCACTGAAAG TACTGGCGAT GGACGGCGTT ATGCGTATCC CTTTCAAGGT ATCTACCACT
ACCAGCAACT TCATGATCGG TGTAACGGCG GCAGCCAGCG CAGTGATCTA TCTGCAGCGT
GGTTATATTG ATCCGGGTAT CGCATTGCCT GTTGTATTGG GCGTACTGGC AGGCGCTTTC
GGAGGATCCC GTCTGCTCAT GAAAATGAAC ACACGCAAGC TCCGCCTGCT GTTCTGCGTA
GTAATCAGCG CACTGGCACT GGAAATGATA TATAATGGTT TTACCGGGAA ATTATAA
|
|---|
| Protein sequence | MSILVFTLIL LVGAFTAGML GSLTGLGGGV VLIPLLTLVF HVDIRYAVGA SLVASIANSS
GAAAAYIKEG ITNVRIGMFL EIATTTGAII GAVLAVYTPT HLVAILFGFV LLFSAAMTLR
KKNEHGDNES NSKLARIMRL NNSYPVNGVE VPYKVRGVAG GYALMTVAGV VSGLLGIGSG
ALKVLAMDGV MRIPFKVSTT TSNFMIGVTA AASAVIYLQR GYIDPGIALP VVLGVLAGAF
GGSRLLMKMN TRKLRLLFCV VISALALEMI YNGFTGKL
|
|---|
| |