| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3298 |
|---|
| Symbol | |
|---|
| ID | 8359464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4064118 |
|---|
| End bp | 4065020 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644965471 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003122966 |
|---|
| Protein GI | 256422313 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00023155 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAA CACAAACATT AGCGGAATTC TATCAGCAGA AGTTCAACTG GCTGCCTGAA
AACCTACAGC AGGATATAGG ACATTTCAAT GTGTTCCGGT TGGAAGACTT CCAGGGGCCG
TCTGCAAAGA CCTTTAAATA CAGCCGCCGG GATTTTTATA AGATCAACCT GGTCAGAGGC
CGGAATGTCT ATCACTATGC AGATAAAAGC GTAGAACTGG ATGGCAGCAC CCTGACTTTC
TTCAATCCCC AGGTACCTTA TACATATGAG ACCCTGTCTG AAACAAAGAC AGGTTTCTTC
TGTATATTTA AAGAAGGCTT CTTTACGGAG CGTATGAGAG GCAGTATCAA TGAATTACCC
ATGTTCGCCC CGGGAGGTAA ACCTTCTTAT ATGCTGACGG AAGAACAGGA TGCACACGTC
AGCCAGATCT TCACCAAAAT GCTGGAGGAG ATCAACTCTG ATTACCGGTA TAAGTATGAT
CTGCTGATGA ACTATGTGAC TGAAATGATC CATTATGCCC TGAAACTGGA GCCTACCGGG
ACATTATATA AACATCCCGA TGCCAAATCC AGGATCACCT CTATCTTCAC AGAACTGCTT
GAAAGACAGT TTCCTATTGA ATCCCCATCC CAGCGATTCA CACTCCGTTC AGCCAAGGAT
TTTGCAGACC ACCTGGCCGT ACACGTCAAT CACCTGAACA GGGCCATCAA GGAAACCACT
GGTAAAACTA CCACCGAGCA CATCTCAGAA CGTCTGGTCA GCGAGGCCAA AGCCCTGCTG
AAACACACCA ACTGGAACGT TTCTGAGATC AGTTACTGCC TGGGCTTTGA GGAACCGGCC
CATTTCAACA ACTTTTTCAG GAAACAGACC AGCCAGACGC CATCCTCTTT CAGGATTGTT
TGA
|
|---|
| Protein sequence | MAETQTLAEF YQQKFNWLPE NLQQDIGHFN VFRLEDFQGP SAKTFKYSRR DFYKINLVRG
RNVYHYADKS VELDGSTLTF FNPQVPYTYE TLSETKTGFF CIFKEGFFTE RMRGSINELP
MFAPGGKPSY MLTEEQDAHV SQIFTKMLEE INSDYRYKYD LLMNYVTEMI HYALKLEPTG
TLYKHPDAKS RITSIFTELL ERQFPIESPS QRFTLRSAKD FADHLAVHVN HLNRAIKETT
GKTTTEHISE RLVSEAKALL KHTNWNVSEI SYCLGFEEPA HFNNFFRKQT SQTPSSFRIV
|
|---|
| |