| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3288 |
|---|
| Symbol | |
|---|
| ID | 8359454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4048349 |
|---|
| End bp | 4051735 |
|---|
| Gene Length | 3387 bp |
|---|
| Protein Length | 1128 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644965461 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003122956 |
|---|
| Protein GI | 256422303 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0970492 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.00551669 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA AGTATTGTTA TGGAAGCCAT TTAAGGCGGG GGGCGGTATG GTTACTGCTC
GCAGCTGCTC CTGCCGGGCT TTTTTCTTCA CTATCCCTCA TGCCCGTCGG TGTCTATGCG
CAAACACCGG CTACACCCGG CATCACCCTT GACGTAAAGA ATATTACCGT ACCTGCATTA
CTGAATGAAA TTAGAAAACA GGCCGGACTA CGTTTTATCT ACGACCAGGA AGAGCTGAAA
AAGCTGCCTC CTGTTACCAT GCGTGTGAAA AACGCTACCC TCGATGAAGT AATGCGCAAA
GCATTAGGCA ACGCCCGCCT TTCCTGGAAT ATGGAAAACG GGGTACTCGT TATCAAAAGA
GGTACGCCGG CGTCCACTCC AACAAACATC AACACGGTTA CCGAACAGGC GTCTCAACTG
GTGACCGTAC GCGGTAACAT TACAGACGAC AACAGGCAGG CGCTGGGTAA GGCTACCATA
CTGGACCTCA AAAGCCATAT AGGGGCTTTT ACCGATGAAA GCGGCAACTT CGAAATAACA
ACCTCTCCGG ACGCCATTCT GCAGGTTTCT TATATCGGTA TGGAGCCACA AATGGTGGCC
CTCAAAGGAC GTACATCGCT CAAGATCTCC CTGGTATCGA GGAACAACGC AAAAGAAGTC
GTTGTAACCG GTATCGTTAA TCGTAAGAAG GAAAGCTTTA CAGGCGCTTC CGCGACTTAT
ACCGGCGGAC AATTAAAAAC CGTAGGTAAC CAGAACGTAT TGCAAAGTCT GAAAACACTG
GACCCTTCTT TCGTCATCGT CGAAAACAAT ATGGTAGGCG CTAACCCGAA CGCAATGCCT
AATATTGAAA TACGTGGTAA AAGCAGTCTT ATCTCCGTTC AGACGCAATC CAACGCAAAC
GCCAACCAGC CATTATTTAT ATTAGATGGT TTCGAAACCA CCCTGCAGGT TATCAATGAC
CTGGATATGA ACCGTGTGGC CGCTATCACC GTATTGAAAG ATGCGGCGTC CACCGCACTG
TATGGCGCAC GTGCGGCCAA CGGGGTTGTG GTGATCGAAA CACTGAAGCC CAAGCCAGGC
GCTATGCGCG TAAGTTATAA CTATGACTTT CGCATGGAAG CGCCTGACCT GACCAGCTAT
AATATGATGA ACGCCACAGA GAAGCTTGAA TATGAAAAGC TGGCAGGCAG ATATACGATC
AACAAGAGTA TGGCGCCGCT GTATGAATCA CAGATCCTGC TGGATGACCT GTATGCCAGG
CGCCTTACCA ATGTAAAACG TGGCATCAAT ACCTATTGGC TTAATGAACC AGTACGTACC
GGTATCACCA ACGGACATGC CCTGTATGCA GAAGGTGGAG ATAACCAGAT GCGCTATGGT
GTAGGTGTGA ACTACAAGGA CCTCAATGGT GTAATGAAAG GCTCCGGCCG TAACACCTGG
GGCGCCAACG TAGATCTCCA GTACCGTAAA GGCAAATTGA ACATCAGCAA TAAACTCTAT
TTGAATGGAT ACCGTGCAGA CCAATCTCCA TATGGTTCTT TTTCAGAGTG GGTGAAGGTA
TTGCCTTACT TTGAAAAGAG AAATCCAGAC GGGTCGGTTG ATCCATATCT TGATATATAC
AGGACTTCCA ACAACCAGAT CGATACCGCC GGAAACCCAT TGTATAATGC AACGCTCAAT
AGTTACGATT ATACAAAGTC ACAGGCCATC TCAGAGAATC TGCAGATGAT CTATGATATC
AACAGCGACC TGCGCATCAC CGGTGGTATC AACATCACCA CTGATAACGC CACAACAAAG
ACTTTCCTGT CTCCGATGAA TACGACCTTT ATCGGTAAAA CCGCAGAAAA CAGAGGTACG
TATGACTACG ATGAACAAAG ACAATTCGGA TACAATGCTA ACCTGATGGT CTCCTTCGGA
AAACTGATCC GAGACAAACA CCAGGTCAAC CTGAACGCAC GTGGCGAGAT CAGGAATGAG
GAGAGCATTC GCGAGGCTTT TACGGCTTCA GGCTTCCCTG TTGGTGCGCC GGGTAATCCT
TCCTTTGCCT ACGGTTATGA GCCCGATGGT ATACCTGTAT ATGCCAGGTC AGTCAGGCGT
AGCGTAGCTG GTCTGGCGAC AGCCAGTTAT ATGTTCGACC GCCGCTTCCT GCTGGATGGA
TCCTTCCGTA TGGATGGTTC GACTTCCTTT GGTACGAATA ATAAATACTC GCCTTTCTGG
TCAGCTGGTG TCGGTTATAA CCTGCACAAT GATGCTTTGC TCCGTGATGT GAAATGGATC
ACATTGCTGA AGCTCCGTGC GAATATTGGT CTGACGGGTA ACCAGAATTT CCAGGGACTT
TCCTCTGAAT CCGTTTACGG CATCAATTCA GCCAATAACC AGTTCGGACA GGGGTATACT
ATCAAAAACA TTGGTAATCC CGACCTGAAA TGGCAGAATT CCATGTCAAC GGATATCGGT
GCGGATATGT CGTTCCTGAA AGACCGTATC ACATTGACGG TGGACTACTA TAAAAAGAAC
ACCGATCCGT TGATCGCATT AGTGACGACA CCCTCTTCCA CCGGTATCAG TGCATACCCT
TTTAACATCG GTTATCAGCA TACCCGTGGT GTGGAATGGA ACCTGAAGGC ATCACCCATC
CGCAATCTGC AGAGAAACCT CTATCTGACG CTGGGGATGA CCGGCCGTTA CCAGAAAAGT
ACCTACGGTG GTTTCCTGAC CATGATGGAG AAACAGAATG ATCTGGCACA GGATAATAAT
TCACTCCAGC GCTTCAGAGA TGGAAGCAGT CCGGATGCTA TCTGGGCGGT ACGTTCTGCC
GGTATAGATC CTGGTACAGG AAGGGAAGTA TTTGTCAAAA AAGATGGCAC CAAATCATTC
GACTATGAGG CCAGAGATGA GGTCGTAGTT GGTAATGCAC AGCCTACAAT GGAAGGCATC
TTTAGTGCGA ACCTTCGCTG GAGCGCATTC ACCTTTGGTA TGAACATCCG CTATACTTAT
GGTGGCGACG TCTTTAACCA GGCGCTGTAT GACCGTGTAG AGAATATCTC CGTCAGAAAA
GTAGCAGAAG AGAACCTGGA TAAACGTGCC CTGTATGAGC GCTGGAAGCA ACCGGGAGAT
GTATCCCGTT TTAAGGCGAT CAATGATTTC ACGGCAGTGA AAATGACTTC CCGTTATGTA
CAGCGTAATA ACTACCTGGC AGGAGAATCC ATCAATGTCA GCTATGAATT GCTGAACAAA
GCATGGATGC GTCAGGCCGG ATTGTCTACG CTTCGTTTCT CAGGTTATAC AAATGATGTG
TTCCGCCTGG CGACTATCAA AAGCGAACGT GGAACGGACT ATCCTTTCTC GAATTCCTAC
TCATTGAGTG TAAGGGCCAC TTTCTAA
|
|---|
| Protein sequence | MKKKYCYGSH LRRGAVWLLL AAAPAGLFSS LSLMPVGVYA QTPATPGITL DVKNITVPAL
LNEIRKQAGL RFIYDQEELK KLPPVTMRVK NATLDEVMRK ALGNARLSWN MENGVLVIKR
GTPASTPTNI NTVTEQASQL VTVRGNITDD NRQALGKATI LDLKSHIGAF TDESGNFEIT
TSPDAILQVS YIGMEPQMVA LKGRTSLKIS LVSRNNAKEV VVTGIVNRKK ESFTGASATY
TGGQLKTVGN QNVLQSLKTL DPSFVIVENN MVGANPNAMP NIEIRGKSSL ISVQTQSNAN
ANQPLFILDG FETTLQVIND LDMNRVAAIT VLKDAASTAL YGARAANGVV VIETLKPKPG
AMRVSYNYDF RMEAPDLTSY NMMNATEKLE YEKLAGRYTI NKSMAPLYES QILLDDLYAR
RLTNVKRGIN TYWLNEPVRT GITNGHALYA EGGDNQMRYG VGVNYKDLNG VMKGSGRNTW
GANVDLQYRK GKLNISNKLY LNGYRADQSP YGSFSEWVKV LPYFEKRNPD GSVDPYLDIY
RTSNNQIDTA GNPLYNATLN SYDYTKSQAI SENLQMIYDI NSDLRITGGI NITTDNATTK
TFLSPMNTTF IGKTAENRGT YDYDEQRQFG YNANLMVSFG KLIRDKHQVN LNARGEIRNE
ESIREAFTAS GFPVGAPGNP SFAYGYEPDG IPVYARSVRR SVAGLATASY MFDRRFLLDG
SFRMDGSTSF GTNNKYSPFW SAGVGYNLHN DALLRDVKWI TLLKLRANIG LTGNQNFQGL
SSESVYGINS ANNQFGQGYT IKNIGNPDLK WQNSMSTDIG ADMSFLKDRI TLTVDYYKKN
TDPLIALVTT PSSTGISAYP FNIGYQHTRG VEWNLKASPI RNLQRNLYLT LGMTGRYQKS
TYGGFLTMME KQNDLAQDNN SLQRFRDGSS PDAIWAVRSA GIDPGTGREV FVKKDGTKSF
DYEARDEVVV GNAQPTMEGI FSANLRWSAF TFGMNIRYTY GGDVFNQALY DRVENISVRK
VAEENLDKRA LYERWKQPGD VSRFKAINDF TAVKMTSRYV QRNNYLAGES INVSYELLNK
AWMRQAGLST LRFSGYTNDV FRLATIKSER GTDYPFSNSY SLSVRATF
|
|---|
| |