| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3254 |
|---|
| Symbol | |
|---|
| ID | 8359420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4006906 |
|---|
| End bp | 4007493 |
|---|
| Gene Length | 588 bp |
|---|
| Protein Length | 195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644965427 |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_003122922 |
|---|
| Protein GI | 256422269 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAACA GGGATGAGAA CAAAGAACTG ATGATCCGGG AAAAAGCGAT CGCGATGATC
GTCAGTGAGG GATTTGATGG ACTCAGTATG CAAAAACTGG CCAAAGAAGT GAATATCTCT
GCTTCTACGA TTTATATATA TTTTAAGAAC AGGGAAGACC TGCTGAATCA ACTGTACATG
GGTGTACAGC ATACCTTTGA AAAGGATGCC CTCACCGGGT TTTCACCGGA GATGTCATTT
GCAGACGGAC TCTGGCTGCA ATGGAAAAAC CGGCTCAAAA ATATCAATCA GCATCCGGTT
GCGTATCAGT TTTACGAGCA GTTCAGAAAT TCTCCTTTGA TCAATCATGA AGATATAAAG
CCCGCCACCT TCAGGAAGGC AATGAATGAC TTCGTCAGTA ATGCCGTTAA AAGAGGAGAA
ATAAAAGACT TGTCTCCGGA GCTTTTCTGG GCAATCGCTT ACGGTCCGTT CTACACACTC
GTCAGATTCC ATCTTTCCAA TGCAAATATG GCCGGTGCTG CTTTTTCATT AACAGAAAAG
AAATTAAAGA AAGCACTCGA ACTCGTATTG GCAGCACTGG CAACATAA
|
|---|
| Protein sequence | MRNRDENKEL MIREKAIAMI VSEGFDGLSM QKLAKEVNIS ASTIYIYFKN REDLLNQLYM
GVQHTFEKDA LTGFSPEMSF ADGLWLQWKN RLKNINQHPV AYQFYEQFRN SPLINHEDIK
PATFRKAMND FVSNAVKRGE IKDLSPELFW AIAYGPFYTL VRFHLSNANM AGAAFSLTEK
KLKKALELVL AALAT
|
|---|
| |