| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3116 |
|---|
| Symbol | |
|---|
| ID | 8359281 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 3835692 |
|---|
| End bp | 3836825 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644965289 |
|---|
| Product | glycosyl transferase group 1 |
|---|
| Protein accession | YP_003122785 |
|---|
| Protein GI | 256422132 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.304233 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAAA AGAAAATTCT TTTTCTCGGT CCGGCATGGC CATTCAGAGG TGGCTTGTCT
GCCTATAATG AAAGACTCGC GGAAGAACTG CAAAAAGATG CAGAAGTAGA AATCTGGACG
TTTACCGTAC AATACCCCTC CTTCCTTTTT CCGGGCAAGA GCCAGTTTAC GGACGCTCCT
GCGCCTGCAA ACCTGCGTAT CCGCAGACTG ATCAATTCTG TCAATCCGCT GAACTGGATC
AAGGTAGGCC GCATGATCCG TAAATGGAAG CCCGATCTGA TCGTAACCAA ATACTGGCTC
CCGCTGATGG GACCATGTCT GGGTACGCTG CTTCGTCTGG GTAAAAGTAA ACACACGCGG
GCAGTGTCCA TCCTCGATAA CGTGATACCA CATGAGAAAA GACCTGGTGA TGTGCCATTT
ACAAAATACT TCCTCAAACC CGTAGATGCG TTTATCGCTA TGAGCCAGTC CGTACTGGAT
GATCTGCGTC AGTTTGAGCC CGGTAAACCA GCTTCTCTCA TTCCTCATCC TGTATACGAC
AATTACGGTA CGCCTGTATC AAAGTCAGTA GCCAGGGAAC AGCTGAAACT GGAGCAGGAT
AAGAAATACA TCCTGTTTTT TGGCTTTATC CGTGAATATA AAGGCTTAGA TCTGCTGCTG
AAAGCCATGG CCGACGAACG GCTGAAAGCA ATGGACGTAC GCCTGGTAGT AGCAGGTGAG
TTTTATGGCG ACTCCGCTAA TGTTATGCGT CTCCTGGATG AACTGAAACT AGGCGAAAGG
GTGATCCTGC ACACTGATTT TATTGCAGAA GACGCGGTAA AAAACTATTT CTGTGCAGCC
GATCTGGTGG TACAACCTTA CAAAAGCGCC ACACAGAGTG GTATTTCCCA GATAGCTTAT
CATTTTGAAA AACCAATGGT GGTTACCCGT GTTGGTGGCC TGGTTGAAAT GGTACCGGAC
AATATCGTCG GTTTCCAGTG TGAACCGGAA CCTGCAGATA TCGCTGCTAA GATTGCGAAG
TACTACACCG ACAACCGCGA GGCTGATATG ACGGCCGCTG TTCGTGTAGA GAAAAAGCAA
TATTCCTGGG AAAGACTGGC CGGAGAGATT AACCGACTGG TTTACAGTAA ATAA
|
|---|
| Protein sequence | MAKKKILFLG PAWPFRGGLS AYNERLAEEL QKDAEVEIWT FTVQYPSFLF PGKSQFTDAP
APANLRIRRL INSVNPLNWI KVGRMIRKWK PDLIVTKYWL PLMGPCLGTL LRLGKSKHTR
AVSILDNVIP HEKRPGDVPF TKYFLKPVDA FIAMSQSVLD DLRQFEPGKP ASLIPHPVYD
NYGTPVSKSV AREQLKLEQD KKYILFFGFI REYKGLDLLL KAMADERLKA MDVRLVVAGE
FYGDSANVMR LLDELKLGER VILHTDFIAE DAVKNYFCAA DLVVQPYKSA TQSGISQIAY
HFEKPMVVTR VGGLVEMVPD NIVGFQCEPE PADIAAKIAK YYTDNREADM TAAVRVEKKQ
YSWERLAGEI NRLVYSK
|
|---|
| |