| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2783 |
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| Symbol | |
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| ID | 8358944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 3425957 |
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| End bp | 3427138 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644964963 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_003122463 |
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| Protein GI | 256421810 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00987855 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACCACT TATTTCAACA AGTTTACAAA CAAAAGCCTG TAGGCTTTCT CTATAGCCTG
ATACTGCTGG CAGTATTATC AGGTTGCGCT TCCTCTTCCG CTAATCCGGA AGGTGGTGCT
CCTCCTGTAA CTGCGTTGCC TGTATTCAAG GCCGCCGCGG TTCCTGCTTC CACTCACCGT
GAATATAACG CTGCACTGGA AGGTAAGGTG AACGTGGAGA TCCGTGCACA GGTAGATGGA
TATATCGATA AGATCTTTGT AGATGAAGGC GCTTATGTGA AAGCCGGACA ACCATTATTC
CGCATCAATG ATCGTCCTTA TCAGGAACAG TTGAGCAACG CATCAGCCAG TCTGCTGGCG
GCACAGGCCA ATGAAGAAAA AGCATCGCTG GAAGTATCCA GACTGACGCC GCTGGTAGAC
AATAATGTTG TATCCGACAT ACAGCTGAAA ACGGCCAAAG CCGCTTACCA GGCTGCAAAA
GCCAATGTAG CACAGGCACA GGCCATGGTC AGCAATGCAC GAATTAACGT AGGTTTTACG
CTGATCACAG CGCCTGTGAG CGGTTATATC GGCCGCATTC CTTATAAGAA TGGTAGCCTT
GTAGGTCGTA GCGAAGCGCA GCCACTCACC GTGCTGTCTG ATGTAAATGA AGTATATGCT
TACTTCTCTA TGAGTGAAAT TGACTTCCTG CAATTCAAGG ATAAATTCCC AGGCAATACC
ATCGCGGAAA AAGTAAAACA ACTGCCGCCG GTTGAACTGG TATTACCCGA TAATACCATT
TATCCTGAAA AAGGCCGCAT CGAAACCATG GAAGGTCAGT TCGATAAAAC AATGGGCGCC
GTAAGTTTCC GCGCTACATT TCCAAACCCG AACGGTCTGC TGCGCTCCGG CAATACAGGT
AAAGTAAAAC TCTCTGAATC CTTTGCTGCA TTGGTGGTAC CACAGGAAGC TACTTTCGAA
TTACAGGATA AGATCTTCGT ATTTACTGTT GGCGACAGTA ATAAAGTAGC AAGCAAACCG
ATCACCGTAT CAGGCAAAAA TGGTGCGTAC TATTTCGTGG CAAAAGGCGT GAGCGCCGGT
GAATCTGTTG TATACACCGG GTTAGACCGT CTGCGTGATG GAATGGTGAT TCAACCGCAA
CCCATTTCAA TGGATAGTCT GCTGAAAGCC AGACCGCTCT AA
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| Protein sequence | MNHLFQQVYK QKPVGFLYSL ILLAVLSGCA SSSANPEGGA PPVTALPVFK AAAVPASTHR
EYNAALEGKV NVEIRAQVDG YIDKIFVDEG AYVKAGQPLF RINDRPYQEQ LSNASASLLA
AQANEEKASL EVSRLTPLVD NNVVSDIQLK TAKAAYQAAK ANVAQAQAMV SNARINVGFT
LITAPVSGYI GRIPYKNGSL VGRSEAQPLT VLSDVNEVYA YFSMSEIDFL QFKDKFPGNT
IAEKVKQLPP VELVLPDNTI YPEKGRIETM EGQFDKTMGA VSFRATFPNP NGLLRSGNTG
KVKLSESFAA LVVPQEATFE LQDKIFVFTV GDSNKVASKP ITVSGKNGAY YFVAKGVSAG
ESVVYTGLDR LRDGMVIQPQ PISMDSLLKA RPL
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