| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2445 |
|---|
| Symbol | |
|---|
| ID | 8358600 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 3004953 |
|---|
| End bp | 3008237 |
|---|
| Gene Length | 3285 bp |
|---|
| Protein Length | 1094 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644964629 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003122135 |
|---|
| Protein GI | 256421482 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.896331 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA AGGGACAGTC CAGTAATAAG AAGAAAGATT TTATCATAAA AGCTATGAGA
TTAACATTTC TTTCCATAAC TATTGTGCTT ACTACTTCCC TGATGCTGTC AGCTAATACC
GGCAGCGGTC AGGAACTGAG TAAAAAGATT TCAGTAAGCA TCCGCAGAGG ATCGCTGGAA
AAGGCATTGA AGCAGATGGA AACACAGCTG AACCTGAACT TTGCTTATGA TCAGCAGATG
CTTCAGCGTT ATCAGACTGA CGATCACCGA TTCCAGGACC AGCGTCTGGA TGGTGTGCTC
ACATTGTTAT TTGATAACAA AGATCTTTCC TTCAAAGAAG TGAATGGTGT TATAGTGATC
AATGCAGCAA AAAAAGAACG TGTTGTAAAA CAACAGCAAG GTAAAATACA GGGTAAGGTG
ACCGACGAAC AGGGCGCCCC TTTACCTGGC GCTACGATCA AAGTAGCAGG TGGTACACAG
CACGCCATCA GCGATGCGGA TGGTAACTTT TCCATCGCCC TGGAGCCTGG TGTATATACA
CTGGAAGTAA GCTTCATTTC TTTCAAAGTA CAACGCATCA AGAACGTAGT GGTAAATACC
GACGCTCCTG CCGTGCTGAC TGTAAAGATG AAAGCGGATA TGGGCTCTCT GAATGAAGTG
GTCGTAGTGG GTTATGGTAC ACAGAAACGT AGTGAAGTGA CCTCCGCCGT TTCCACCGTA
AGAGCTGATA ATTTTAACAG AGGCGGTATC CGTTCTACCA TGGAACTGAT CCAGGGTAAA
GTGCCAGGTC TGAATATCAC CAAAACACAG GGAAATAACC CGAATGCGGG CGCTTCCATC
CAGTTGAGAG GTGTTACCTC CTTAACTGGT ACAACCGCGC CACTGGTCGT AATAGACGGT
ATTCCGGGCG GTAACCTCGA TCTGTTACAG CCGGATGATA TCGAATCATT CAGCGTACTG
AAAGATGGTT CTGCTGCCGC CATCTATGGT ACCAGAGGTA ACGCAGGTGT TATCCTGATC
ACTACCCGGA AAGGTACTGC AGGCGATCCC CGCTATGAGT ATAACACTTA CTTCCAGCGT
GATTATACTG ACAAGAAACC TGATTTCCTG TCAGCAGAAC AGTTCCGTCA GAAGATCTCC
GAAGGTATTA TCTCTCCTAC CTCTGACCTG GGTGGTTCTA CCAACATGTA CAATGAACTG
ATCAATAAAA ATAACCTGAG TCAGTACCAT AACCTGTCTG CTTCAGGTGG TAGCGAAAAG
TCTAATTACA GAGCATCCCT CTACTACAAT GACTTTCAGG GTATCGCAAA AGAGAACGGC
AGAAAGCAGG CAGGTGGCCG TCTGAACATC AATCAGAAAG GTTTGAATAA CAAACTCACC
ATGCAGGTGA ATATGGTGGC TAACTTCAAT AAAGCCAACC TGCTGGGTGG TGATGCCGGT
TATTTCGAAC AGGCCGTAGC CTGGAACCCA ACAGCGCCTA TTTATAAAGC GGATGGTAGT
TTCTTTGAAA TCAATGAAGC TTTCAACCCG GTAGGTCGTC TGAATAACCG ACTGAGTCAG
CGTGATCAGC AGACCTTCGC CGGTGATGCA AGATTCAGCC TGGCACTGAC AAAAGACCTG
TCCGTATCCC TGTTCGGTTC TTATCAACGC GATAACTACA ATGACCGTTA CTATCGTTCC
ATGAACGACT TTGAACAACG TCCGGGGACC AGCTGGCAGG GCATGGGTTA CGCCAGCAAA
GGCAATGAAC TGAACTGGAC CAAAACCCTG GATCCTACTG TTAACTACGA GCATAGCTGG
GGTGCACATA CCCTCTCCGC TATTGCAGGT TATAGCTATC AGTATAGCAC CAGAGAGACT
TTCAGTGCCA ATAACAATGG TTTCACTACC GATGCATTCC TTGACTGGAA CCTCGGTGCA
GGTAGCGCGA CTAACAACAC CGCATTGCCA AGACCAGGTC TGGGTAGCTT CAAGGAAGAT
AACACCCTGA TCGCATTTTT TGGTCGTCTG AACTACGCCT ACAAGAATAA ATACCATGCA
CAGTTCATCC TCCGCAGAGA AGGTTCTTCC CGCTTCGGCG CCAATAACAA ATGGGGTAAC
TTCCCGGCTG CTTCTATCGG CTGGACGCTC ACAGAAGAGT CTTTCATGGA GAATGTCAGG
TTCGTAGATA ACCTGAAACT ACGCGTGGGT TATGGTGTAA CCGGTAACCA GGGTATTCCT
AACTACCGTT CCCTGATTAC ACTGGGTACT GGTGGTGTAT ATCCACAGAA TGGTATTTAT
CTGCAGACTT ACGGTGCTTC CCGTAACCCT AACCCCAACT TACGCTGGGA GAAAAAACTG
GAATGGAACT TTGGTCTGGA TTACGCGATC CTCGATCACC GTATCAGCGG TTCCATCGAT
GTATACTCCC GCGAAACCCG CGACCTGCTA TATAACTATG CAGCACAACA GCCGGCCTTC
GTCCGTGACG GATTGTATAC AAACGTAGGT ACTATTAAAA ACCATGGTGT GGAAATCCTG
ATCAGTGGTC AGGCAGTGAA AACAAAAGAC TTCCAGTGGA CGATCGATCT GACAGCGAAC
TCTCAGTTCA ACAGGTTATC TAAACTGTCC AACGAACTGT ATAAAGCTAC TTACCTGACC
TTTGCCGATA TTCCAAACCC GGGTGCTATG GGTCCTGCCA TCCGCCTGGA TGAAGGTGGC
GTAGTAGGTA ACTTCTATGG TAAACGTTTC GCAGGATTCT CAGAAGAAGG TAAATGGTTG
TTCTATAAAG CAGATGGTTC AAAAGCACCT GCTTCCCAGA TCAATGAAAA CGACAGAACG
ATCATCGGTA ACGGCGTCCC TAAATACAAC GCTGCACTGA ACCAGACCTT CCGTTATAAG
AACTTCGACC TGACACTCCT GTTAAGAGGT AAGTTCGGAT TTGATATCCT GAATCTGCAG
GAGATCTTCT TCGGTAACAA AAAGTATCTG CCTAATAACA TTTTCAATAG TGCCTTTAAT
AAACATGCAC AGTTGAACGA CGATCCTCAG TACTCTGATT ACTACATCGA GAAAGGTGAT
TTCGTGAAAC TGGACAACCT GACACTGGGT TACAACTTCA ACTTCAAATC GCCTTATGTG
CGTAGTCTCA GAATGTTCGT ATCCGGCCGT AACCTGTTAA CCTTTACCGG TTACGACGGA
CTGGATCCTG AACTGGAAGA TACCGGCTTT ACCACTGGTG TTGACTCAAG GGGTTTCTAT
CCGAGAACAC GCTCCTGGAC AGTAGGTCTG AACGTAGCAT TTTAA
|
|---|
| Protein sequence | MKKKGQSSNK KKDFIIKAMR LTFLSITIVL TTSLMLSANT GSGQELSKKI SVSIRRGSLE
KALKQMETQL NLNFAYDQQM LQRYQTDDHR FQDQRLDGVL TLLFDNKDLS FKEVNGVIVI
NAAKKERVVK QQQGKIQGKV TDEQGAPLPG ATIKVAGGTQ HAISDADGNF SIALEPGVYT
LEVSFISFKV QRIKNVVVNT DAPAVLTVKM KADMGSLNEV VVVGYGTQKR SEVTSAVSTV
RADNFNRGGI RSTMELIQGK VPGLNITKTQ GNNPNAGASI QLRGVTSLTG TTAPLVVIDG
IPGGNLDLLQ PDDIESFSVL KDGSAAAIYG TRGNAGVILI TTRKGTAGDP RYEYNTYFQR
DYTDKKPDFL SAEQFRQKIS EGIISPTSDL GGSTNMYNEL INKNNLSQYH NLSASGGSEK
SNYRASLYYN DFQGIAKENG RKQAGGRLNI NQKGLNNKLT MQVNMVANFN KANLLGGDAG
YFEQAVAWNP TAPIYKADGS FFEINEAFNP VGRLNNRLSQ RDQQTFAGDA RFSLALTKDL
SVSLFGSYQR DNYNDRYYRS MNDFEQRPGT SWQGMGYASK GNELNWTKTL DPTVNYEHSW
GAHTLSAIAG YSYQYSTRET FSANNNGFTT DAFLDWNLGA GSATNNTALP RPGLGSFKED
NTLIAFFGRL NYAYKNKYHA QFILRREGSS RFGANNKWGN FPAASIGWTL TEESFMENVR
FVDNLKLRVG YGVTGNQGIP NYRSLITLGT GGVYPQNGIY LQTYGASRNP NPNLRWEKKL
EWNFGLDYAI LDHRISGSID VYSRETRDLL YNYAAQQPAF VRDGLYTNVG TIKNHGVEIL
ISGQAVKTKD FQWTIDLTAN SQFNRLSKLS NELYKATYLT FADIPNPGAM GPAIRLDEGG
VVGNFYGKRF AGFSEEGKWL FYKADGSKAP ASQINENDRT IIGNGVPKYN AALNQTFRYK
NFDLTLLLRG KFGFDILNLQ EIFFGNKKYL PNNIFNSAFN KHAQLNDDPQ YSDYYIEKGD
FVKLDNLTLG YNFNFKSPYV RSLRMFVSGR NLLTFTGYDG LDPELEDTGF TTGVDSRGFY
PRTRSWTVGL NVAF
|
|---|
| |