Gene Cpin_2264 details

Gene Information

• Locus tag: Cpin_2264
• ID: 8358419
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chitinophaga pinensis DSM 2588
• Kingdom: Bacteria
• Replicon accession: NC_013132
• Strand: +
• Start bp: 2790034
• End bp: 2793561
• Gene Length: 3528 bp
• Protein Length: 1175 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 644964450
• Product: TonB-dependent receptor plug
• Protein accession: YP_003121956
• Protein GI: 256421303

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.403047
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 41
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTATCACC GTTGTTGGGA CTGTATTTTA TACAGCCTCG GGGTCTTTGT TTTATTTTTC 
TTCCCTATTC ATCCTGTACA GTCACAGGAC CAAAGCAGCC AGCAGAGAGT CTCCCTGCAA 
TATGACAACA TCCAACTTGC TGATCTTTTC CATATCATTT CGCAACAGAC AGGATACATT 
GTTTTCTACG ATAATCAGAT TGTTAACGGG CAACTTAAAG TAACCATACA TATGGATAAT 
GTATCGTTGC AGCAAGTGCT GGAAAAGATA TTACCGGAAA AGGGATATGC ATGGAAAATA 
AAGTCTGATA AGCTCTTCAT CTTTAAAGGC TCTAAGCCTG TTAAGGCTGA AAAGAAAGAT 
GCAAAAGAAC CCGTGTATAG TGTCAGAGGT ATCATCAGTA TGTCTGATGG TACGCCACTG 
GAGGGCGCCA GTATCAGCGT AGCGGCTACA GGTGCTGCCA TTACAAGAAC AAATGAAAAA 
GGGCTTTTCT TCTTTGATAC AAATAGTGAC GACACCCTGA TACGTGTGAG TTACACTGGG 
TTTAAGTCGC AGGAGATCAG TATGAAATCA GGTGTGTCAA CCAATGTGGT CTTACAACCA 
ATGGTCACTG ATCTCGCCGC TGTTGCCGTG AGAAGTAACG GTTATCAGAA GATTCCGCAG 
GAAAGAGCTA CAGGTTCTTT TGTACAGATC AATAATCAGT TGTTTAACCG CCGGGTGGGT 
CCCACTGTGC TTGAACGCCT GGAAGGCATT GCAAGTGGGG TGTTATTTCC CAATAAAAAT 
ATTCCTCCCT CTTCCAACGA AGCCTATATT TCTGTACGTG GCAGAAGTAC CATCCTCGCG 
AATGCAGAGC CTTTGGTAGT CGTAGATAAT TTCCCCTATA CAGGTGATAT CAATTTGCTC 
AATCCTAATG ATGTAGAGAA TATCACCGTA CTGAAAGATG CGGCTGCAGC TTCTATCTGG 
GGCGCTTTTT CAGGGAATGG CGTCATCGTG ATCACGACGA AAAGAGGTAA ACTGCATCAG 
CCTTTTAAAG TGGAAGCGAA TATGAACATC ACCGTCGGTG CGAAACCTGA TCTTTATTAT 
AATCGGGCTT TCCTGCCTGC GAACGAATTT ATAGATGTAG AGAAATTTCT TTTTGACCAG 
GGCTTTTATG ATGATGACCT GTCAAATACG TTCACGTATC CCGTTATTTC ACCGGTAGTG 
GAACTATTAG ATAAAAAGAG GAACGGACTG ATATCAGCGG CCGAAGCAGA TGCAACGATT 
GATAAATATA GACATCTGGA TATCAGAAAA GATTATGAGA AGTACATGTA CAGGAATAGC 
GTGAACCAGC AGTATGCGGT AAACGTCAGT TCGGGAGGAG ATAGGAGTGC GTATATGTTG 
TCTGTAGGGT ATGACAGAAA TGTGGGCAAT AAGGTAGGGG CTGCGTCAGA TAGATTTACA 
CTGAATAATT ATAGTACGTT TAATTTCTGG AACAGGGCGG AGTTGTCGAC AGGCTTGTCG 
TTTGTAATGA ACAAAAGCAA CTATGGCATA AGTAGCCAGA TCTTTCCCGG TGGTGGAAAG 
AGTGTATACT ATCCTTATGC ACAACTGGCC GACAAGGATG GCAATGCGTT GGCTTTGCCG 
AAGGATTTCC GGTATAGTTT TATCAGTAAT CTGCAGGATG AAGGATTGCT GGACTGGACA 
TACAGACCAT TGGATGAGTT GAAGTTTGCA GATAATACAA ACCGGCAGTA TCATATTCGT 
CTAAACCCTG GTCTGAAGGT TAATATTTTT AAAGGACTGG ATGCGGAAAT CAGATATCAG 
TTTGAGAAGC AGATATCCAA AGCAAGAGAT TATCAGAATG TTAATACATA TATGACCCGA 
TATATGATTA ATATTTTTAC ACAGGTTGAA AATGGAGTGG TGACACATCC ATTTCCTGTG 
GGTGACGTGA TAAGTCTGAT GAACAGTGAA ATTACGACTA ACAATTATCG TGCACAGCTG 
AATTTCAATA AGCGTTTTGG CAACAGACAT GTTGTAGCCG CTATCGCAGG ACTGGAACAG 
AGAGAGTCGA TTACAGAAAT CGATAATTTA AATTATATCG GCTATAATAA ACAGGCCAAT 
GCATATAATT CAGCGCTTGA TTATTCCCGA TATTATGATG GGTATATGTA CCTGGGTGAG 
GCTGGATATC TGCCACGTAT TGGAAGTATG AGCCGGTTTA ACAATGAATT TATCTCCTAT 
TACGCAGACG CTTCTTATGA ACTGGATGAT AAATATACGA TATCAGGAAG TGGACGACTG 
GATCAGAGTA ATATATGGGG AATAGTTACG AATCAGAAAG GGGTGCCTTT ATGGTCGGCA 
GGATTAGGCT GGAATATCAG TAGGGAGGCT TTTTATAAAT GGGACGTCTT TCCTCTTATT 
AAGTTAAGAG CAACATATGG TAATAATGGG AATCTGGATC CTGCATTATC CGGGAAGTTG 
GTAGTCAGTT ATCAGCTTAG TCCTAATGTT GCCGGTCTTC CATATGCCTC CATAAATCAG 
CAACCCAATC CTTATTTACG TTGGGAGAAG TCCTCCATGT TCAATTTAGG AACTGACTTT 
GAAACAAAAA ATGGCATTCT CCATGGTAGT GTTGAAGTCT ATAGAAAGTG GGGGTCAGAA 
TTAATAGGAG ATCAGTTGGT GGCGAGTCAG GCGGGTTCGA CTATGATCAG AAATAACTCA 
GCCAATATGG AAGGTGGAGG CATGGACCTT GTTTTATCTT CTGTTAATAT CAATCGCCGG 
GTATCCTGGA CAACCGATTT TTTATTTAGC TACAATTGGG ATAAGATTAC GGCATTTAAA 
TATTTACAGA TATACAGAGG TGCCATTACA GGTGGTGATG GAACCACTGC AAAGGTGTTT 
CCTGTTCTTG GGAAACCGGT ATATGGAATT TATACTTACA GATGGGCAGG GCTTGATCCG 
GAGAATGGAG ATCCGTTAGG ATATCAGGAT GGAAAGGTTA GTAAGGATTA TAATAACATC 
ATTTCCAGCA ATCAGGAAAC GGATATTCAA TACCACGGTC CTGCGAGACC TACATTTTTC 
GGAGCGCTGC GTAACACACT TGCTTATAAA GGGTTGACTC TGTCTGTTAA TCTGACTTTT 
AAAATGGGGT ATTACTTCCG ACGTTCGTCT ATTGCTTATA GCAGCCTGTT TGGTTATTGG 
TCAGGACATG AAGATTTTAT CGACCGCTGG AAGCAGCCGG GAGATGAAGC ACATACGAAT 
GTTCCATCTA TGACATATCC TATAGATCCA AATAGAGATT TGTTTTATCA GTATTCGTCG 
GCGTTGGTTG AGAAAGGTGA TCATATAAGG TTACAAGATG TACGACTGGG TTATACAACA 
AGTGGCGCAT TCCTAAAACG GATAGGAGCA ACGGATGCAC AGGTCTATTT ATATGCTGAT 
AATCTTGGAA TAGTCTGGAA AGCTAATAAA TCCGGGATTG ATCCGGATTA TCTGATCGGT 
ATTCCAATGC CAAGGACACT ATCGCTCGGT TGCAAAGTAA GTTTCTAA 

 

Protein sequence

MYHRCWDCIL YSLGVFVLFF FPIHPVQSQD QSSQQRVSLQ YDNIQLADLF HIISQQTGYI 
VFYDNQIVNG QLKVTIHMDN VSLQQVLEKI LPEKGYAWKI KSDKLFIFKG SKPVKAEKKD 
AKEPVYSVRG IISMSDGTPL EGASISVAAT GAAITRTNEK GLFFFDTNSD DTLIRVSYTG 
FKSQEISMKS GVSTNVVLQP MVTDLAAVAV RSNGYQKIPQ ERATGSFVQI NNQLFNRRVG 
PTVLERLEGI ASGVLFPNKN IPPSSNEAYI SVRGRSTILA NAEPLVVVDN FPYTGDINLL 
NPNDVENITV LKDAAAASIW GAFSGNGVIV ITTKRGKLHQ PFKVEANMNI TVGAKPDLYY 
NRAFLPANEF IDVEKFLFDQ GFYDDDLSNT FTYPVISPVV ELLDKKRNGL ISAAEADATI 
DKYRHLDIRK DYEKYMYRNS VNQQYAVNVS SGGDRSAYML SVGYDRNVGN KVGAASDRFT 
LNNYSTFNFW NRAELSTGLS FVMNKSNYGI SSQIFPGGGK SVYYPYAQLA DKDGNALALP 
KDFRYSFISN LQDEGLLDWT YRPLDELKFA DNTNRQYHIR LNPGLKVNIF KGLDAEIRYQ 
FEKQISKARD YQNVNTYMTR YMINIFTQVE NGVVTHPFPV GDVISLMNSE ITTNNYRAQL 
NFNKRFGNRH VVAAIAGLEQ RESITEIDNL NYIGYNKQAN AYNSALDYSR YYDGYMYLGE 
AGYLPRIGSM SRFNNEFISY YADASYELDD KYTISGSGRL DQSNIWGIVT NQKGVPLWSA 
GLGWNISREA FYKWDVFPLI KLRATYGNNG NLDPALSGKL VVSYQLSPNV AGLPYASINQ 
QPNPYLRWEK SSMFNLGTDF ETKNGILHGS VEVYRKWGSE LIGDQLVASQ AGSTMIRNNS 
ANMEGGGMDL VLSSVNINRR VSWTTDFLFS YNWDKITAFK YLQIYRGAIT GGDGTTAKVF 
PVLGKPVYGI YTYRWAGLDP ENGDPLGYQD GKVSKDYNNI ISSNQETDIQ YHGPARPTFF 
GALRNTLAYK GLTLSVNLTF KMGYYFRRSS IAYSSLFGYW SGHEDFIDRW KQPGDEAHTN 
VPSMTYPIDP NRDLFYQYSS ALVEKGDHIR LQDVRLGYTT SGAFLKRIGA TDAQVYLYAD 
NLGIVWKANK SGIDPDYLIG IPMPRTLSLG CKVSF