| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2196 |
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| Symbol | |
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| ID | 8358348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 2710767 |
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| End bp | 2714936 |
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| Gene Length | 4170 bp |
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| Protein Length | 1389 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644964380 |
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| Product | PKD domain containing protein |
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| Protein accession | YP_003121889 |
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| Protein GI | 256421236 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3291] FOG: PKD repeat |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00127205 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000000751433 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGAGAAAT GGACATTCAG ATCAACCCAA CTCTTTGCTT GCTATTGCTC TCCGCCTGCT
GGCGGGAGCA ACAGCAGCAG GATGTTGCTC CGCAGCTGCT CCGCTGCCTT AATAATCCTG
TTAACCTGTT TGCAAACCTA TGGTCAGAAT TTATCCAACA GAGGAAAGAG CTTCTGGGTA
GGATATGGCC ATCACCAGTT CATGGAGCCC AACAGAGGTA ACTCGCAGGA AATGGTACTC
TATCTGAGTG CAGAAGAACC TGCCAATGTT ACCGTCACGA TTGATGGCAC CACCTGGTCG
AGATCTTATT CAATTCCTGC CAATACTGTT ATTGCAACAG ACCAGATCCC TAAGACGGGG
ACCTTTGACG CAAGACTTTA TTCTGTACCG CCCACTTTCG GTGGTACCGG TGGGGAAGGT
TTATTCCAGC GGAAAGGTAT TCATATCGTC AGCGACGTTC CTATTGTGGC TTATGCACAT
ATTTATGGCA GTGCTTCTTC AGGAGCGACT ATGCTGATGC CGGAGGATAC CTGGGGATAT
TACTATGTTT CACTGAACAG TCAGCAGGAC TACGACTTTG ACTGTTTCTC CTGGATGTTT
GTAGTAGCGA AAGAAAATAA TACAGTAGTT GAGATCACGC CTTCCGTACC TACCCGTAAT
GGTAAATTGC CTGGTGTACC ATTTACTGTT ACCCTGAACA GGGGAGAGAT CTATCAGGTA
ATAGGTGCAT CGCTTGGTGG AAGTGCCGGA CATGAAATGA CCGGTACGAC TGTCAGGTCA
ATTGCCAATG TCAATGATAC CTGTTTCCCT GTAGCGGTGT TCTCTGGCAG TAGCCGTACA
GCTATTGCCT GTGCCGGTAA CTTTGGATCC AGTGGGGATA ACAATATTCA ACAGGTATTT
CCTTCGCAGG CATGGGGAAA ACGTTATCTC ACAGCGCCGA GTTCTGTTGA TAATACGCCT
AGTAGTTTTA TGACCAACCC TTATAAAGTA GTGGTAAAAG ATCCGACTAC TGTGGTAAAA
CGTAACGGTG TACAATTAAC AGGTTTGCTG AATAACGCTT ACTATGAGTA TGAAAGTAGT
AGTCCGGACC TGATTGAAGC AGATAAACCC ATATTGGTAG CACAGTATAT GTCGTCTACC
GGCGCCTGTC CTAATACCGG CGGAGATGGT GACCCGGAGA TGGTGTACCT GAGTCCTGTG
GAGCAATCCA TCAAAAGGAT AGGGTTCTAC AGAAATAACC GGGAGAATAT TAATGTGAAC
TACCTCACGA TGATCATACC CACCAATGGT CTGAATACAC TGACGATTGA TGGTGTGGCT
AATTCCTGGA ATGTGGCGGT CCCACATCCG AATATACCGG GTTACTCCGT TGTCATTAAA
AGATGGAATG CCACACAGGC CCAATGTATA GTGCAGAGTG ATTCTGCCTT TACTGCTGTG
ACTTATGGTT TGGGGTCGGT GGAAAGTTAT GGTTATAACG CAGGTACGCT CATCAATAAC
CTGAATGTAA TCGGGGTTAT CCACAATGAA CAGGATACCT CATCTTATAA AAATGATTTT
ACCTGTACAC AAACGCCGGT TGAATTGTCC GTGCTGTTGG CATACAAGCC TACGGAGATG
CACTGGAATA TCAGTAAACT GGGTAATGTC GTAACGCCTA ATGTGGATGT GGCACAGGTG
AACCCTTTAC CGGTAGGAGA AGAACTGGTG AATGGCGTAC CTTATTATAA ATACACCTTG
CCAGGTACTT ACCTTTTCAG CACAATAGGT AAATATGAAA TTCCGATTGT TAATACACAT
CCAAGCATTG AGAAATGCGA TCATAAAGAA GAAGTAAAGA TTTCTGTAGA TGTAAAACGT
AAACCTACTG CTTCGTTTAC CACCAACTTC ACTGGTTGTA CAATGGATAC GGTGTATTTC
AAAGCGGATA GCAGTGGTAA CGGTTATACT ATTGACCGTT GGAAATGGAC ATTCCCGGGT
GGTGTACAGG ATAGTGGCGC AATCGTACAA CGCAGGTTCC CGGTAGGACA GCAGAATATT
CAGCTGAGTG TGATTTCAAA AGAAGGTTGT CTGGCTGATA CGGTAATACC TGTTAGCGTA
GTCGCCATCC CTGTCGCTGA TTTTACGACA GCGCCGGCTG CTGTGTGTGA AGGAGGAAGT
GTGCAGCTGA CGGACCAGTC TACTTACGGA GGCACAGCCC CTATCAAAAA CTGGTACTGG
AATTTTGGGA ATGATACAAT TGCATCACTT GATAGTGCCG CAGTGCAGAA AGCGAATTAC
AGTAAATATG GCACTTACAC AATCGCGCAT GTAGTAAAAG TGAGTGAATT GTGTGTGAGT
GATACGGTGA AGAAAACAAT AACTGTCAAT GCGAATCCTG TTGTAGGATT TACTTATCCG
GATACTTGTC TGCTGGCAAC CGGAGAAGTA CAGTTTGTCA GCACAACGAC TGTGCCTGAC
GGACAAGCCA TCAGCACCTA TGCATGGGAT TTCGGAGATG CGAACGCTAC TCCAGGCAAT
CCTAATACCG CTGCTATTGC GGATCCGTTA CACAGTTATT CGCGTTTTGG TACTTATACC
ATTAAATATG CAGTAACCAC TGCGCAGGGC TGTAAGAAAG ATACCACTGT ACAGGCCACC
TTTAATCTGA AACCGGCCCT GACATTTGGT GCGACATTGC CTGCCGTTTG TATTAATGAC
AAAACAATCA TCTCTGTCGC AAAAGCAAAC GTAACCAATG GCGTGACGGG CACTGGTATC
TACAAGGGGA ATGGTGTGTC ACAGGCGGGT ATATTCAATC CGTTGACAGC CGGCGCCGGT
ACACATACTG TATGGTATGT ATTTACCGCA CAGGGAGGTT GTACAGATTC TATTTCTGCC
ACCATCACAG TGTATCCGAA ACCACAGCCG GTGTTTACTG CCAACGGAGA TGTGTGTCTG
GGTGAAGCAG TGAGCTTCGC AGATCAGTCT ACCATCAGCA CCGGAAATAT TGTTACCTGG
AAATGGAGCT TCGGAGATGG CACTACAGAA AACCGCACGG ACAATACCAC CTTTAATAAG
ACTTATACAG CGTGGAAAAA CTATAATGCA AAACTGGTGA CTGTCAGCGA TCACGGATGT
ATCAGTGATA CGGCTACCAG AACAGTTGCT GTACATGCGC TGCCGGTTCC TGATTTCGCA
TTACCAACGA ATATCTGTAT GCCGGAAGGT GCTGCACAGT TCAATAACCA GTCTGCAGTT
CCTGATATGT CAACCCTGGC TTATCAATGG GCATTCGGTG ATGGCAGTAC CGCAACCGAT
GCGTCTCCTT TACATCATTA CCAGGATGCC GGGTCCTATA CCGTCGTACT GACTGCTACA
TCCGTATATG GTTGCAGGGC TACAAAAGAA AAAGTACTGG CTGACTTCTA TACACAACCG
ATGGCTGATT TTACGGTGTC GCCTGATACA CTGTGTCAGG GTGCTGATAA TATCTTCACA
GACAGGAGTG TGGATGCTAA TAATAACATC GTGTCATGGG CATGGACCTT TGGTGACGGT
AGCGGTTCTA CAGATCGTAA TCCTGTAAAA CGCTATACAG AACCGGGAGA TTATCCTGTA
CAGCTGGTAG TTGCCAATGG CGCTGGTTGT GTATCCGTTC CGTTTACCAG CAATGTAGTG
GTATATCTGC AACCAGTTAT CGATGCAGGA CCGTCGTTCA TTGTTGCCCA GGGCAGCCAG
GTAAGATTTG CGCCAACTGT TAACGACTCT TTACTGAACT TCCGCTGGAC ACCACCTGAT
GGGCTTTCTG ATCCTACTGT ACTGAGACCG GTGCTGAACG CAATGGAAGA CCAGGTATAC
ACACTGACAG CGATAGGAGA GGGAGGTTGT ATCGCAACAG ACGAAACCTC TGTGAAAGTC
TTCAAGAAAG TGAGTATCCC CAATGTGTTC TCTCCGAATG GCGATCAGAT CAACGACAGA
TGGGTACTGA CCAATCTGGC TGATTACGCC GAGTGTACAG TAGAGGTCTT CAATCGTTAC
GGACAACAGG TATACTATTC CGAAGGATAT AAGACGCCAT GGGACGGCAC TTACAAAGGC
CATTTATTAC CGCAGGCCAC TTATTACTAT GTCATTAAAC TAAACAATGG TACAGCCCCA
ATGACAGGCT ATGTAGTCAT CTTACAATAA
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| Protein sequence | MEKWTFRSTQ LFACYCSPPA GGSNSSRMLL RSCSAALIIL LTCLQTYGQN LSNRGKSFWV
GYGHHQFMEP NRGNSQEMVL YLSAEEPANV TVTIDGTTWS RSYSIPANTV IATDQIPKTG
TFDARLYSVP PTFGGTGGEG LFQRKGIHIV SDVPIVAYAH IYGSASSGAT MLMPEDTWGY
YYVSLNSQQD YDFDCFSWMF VVAKENNTVV EITPSVPTRN GKLPGVPFTV TLNRGEIYQV
IGASLGGSAG HEMTGTTVRS IANVNDTCFP VAVFSGSSRT AIACAGNFGS SGDNNIQQVF
PSQAWGKRYL TAPSSVDNTP SSFMTNPYKV VVKDPTTVVK RNGVQLTGLL NNAYYEYESS
SPDLIEADKP ILVAQYMSST GACPNTGGDG DPEMVYLSPV EQSIKRIGFY RNNRENINVN
YLTMIIPTNG LNTLTIDGVA NSWNVAVPHP NIPGYSVVIK RWNATQAQCI VQSDSAFTAV
TYGLGSVESY GYNAGTLINN LNVIGVIHNE QDTSSYKNDF TCTQTPVELS VLLAYKPTEM
HWNISKLGNV VTPNVDVAQV NPLPVGEELV NGVPYYKYTL PGTYLFSTIG KYEIPIVNTH
PSIEKCDHKE EVKISVDVKR KPTASFTTNF TGCTMDTVYF KADSSGNGYT IDRWKWTFPG
GVQDSGAIVQ RRFPVGQQNI QLSVISKEGC LADTVIPVSV VAIPVADFTT APAAVCEGGS
VQLTDQSTYG GTAPIKNWYW NFGNDTIASL DSAAVQKANY SKYGTYTIAH VVKVSELCVS
DTVKKTITVN ANPVVGFTYP DTCLLATGEV QFVSTTTVPD GQAISTYAWD FGDANATPGN
PNTAAIADPL HSYSRFGTYT IKYAVTTAQG CKKDTTVQAT FNLKPALTFG ATLPAVCIND
KTIISVAKAN VTNGVTGTGI YKGNGVSQAG IFNPLTAGAG THTVWYVFTA QGGCTDSISA
TITVYPKPQP VFTANGDVCL GEAVSFADQS TISTGNIVTW KWSFGDGTTE NRTDNTTFNK
TYTAWKNYNA KLVTVSDHGC ISDTATRTVA VHALPVPDFA LPTNICMPEG AAQFNNQSAV
PDMSTLAYQW AFGDGSTATD ASPLHHYQDA GSYTVVLTAT SVYGCRATKE KVLADFYTQP
MADFTVSPDT LCQGADNIFT DRSVDANNNI VSWAWTFGDG SGSTDRNPVK RYTEPGDYPV
QLVVANGAGC VSVPFTSNVV VYLQPVIDAG PSFIVAQGSQ VRFAPTVNDS LLNFRWTPPD
GLSDPTVLRP VLNAMEDQVY TLTAIGEGGC IATDETSVKV FKKVSIPNVF SPNGDQINDR
WVLTNLADYA ECTVEVFNRY GQQVYYSEGY KTPWDGTYKG HLLPQATYYY VIKLNNGTAP
MTGYVVILQ
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