| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2176 |
|---|
| Symbol | |
|---|
| ID | 8358328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2668625 |
|---|
| End bp | 2670091 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644964360 |
|---|
| Product | cytoplasmic alpha-amylase |
|---|
| Protein accession | YP_003121869 |
|---|
| Protein GI | 256421216 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCAGT ACTTCCACTG GTATACGCCA GAGGATGGAA GTTTATGGAA TACGGTGAAA
AAAGAAGCCC CAAAACTGGC CGCCCTGGGT ATTAACGCCA TCTGGCTGCC GCCTGCCTAT
AAAGGAGCGG ACGGCGCCAG CAGCCGTGGA TATGACGTGT ATGATCTGTA TGACCTCGGT
GAGTTTGATC AGAAAGGGAC GGTTCGTACC CGTTACGGTA CCCGCGAGGA GTTTGAAGCA
GCTGTTAAAG CTATTCAGGA GAGCGGTATG CAGGTCTATG TGGATGTTGT GGCAAATCAC
CTGATGGGTG GAGACGAAAC GGAAAAGGTG ACGGTACGTA AAGTAGATGC GGAAAACAGG
AACGAGTTTA TTTCTGAGCC GATGGAAGTC GAGGCTTATA CCCGTTTTAC TTATCCGGGC
CGTAAAGGTG CGCATTCTGA TTTTGTATGG GATCACCAGT GTTTTACCGG TATCGATCAT
GTCAGCAATA GTGATGAAGA GGGCATTTTC ACCATTCAGA ATGAATATGG CGAAGGATGG
GAGGAAGTGA TAGACACGGA AAAGGGAAAC TATGACTACC TGATGGGCGC CGATATAGAA
TTCCGTAATC CTGCTGTCAG AGAAGAATTC AGAAGATGGG GAGAATGGTA TTACAATGCG
GTGAAATTTG ATGGTTTCCG TCTGGATGCG GTGAAACATA TTACGCCTTC TTTCTTCAAC
GAGTGGCTGG ACCAGATGCG TCAGTATACC GGCAGAGAAT TGTTTGCAGT AGGAGAATAC
TGGGCGCCAG GTCAGCTGGA CCTGTTATTA AAGTATATAG AAGCCACAGA GGGCAAAATG
TCTTTATTCG ATGCCTCTCT GCATCATAAT TTCTATGATG CTTCCCTGAA AGGAAAAGAC
TATGATCTGA CAACCATCTT TGATGGTTCG CTGGTACAGG CGAAGCCTTT CCTGGCAGTG
ACGGTGATTG GTAATCATGA TACCCAGCCA TTGCAGGCAC TGGAAGCACC GGTGGATTAC
TGGTTCAAAC CGATTGCTTA TGCACTGATC CTGTTGCGTG AGCATGGTTA TCCTTGTGTC
TTTTATCCTG ACCTGTATGG TGCAAAGTAT ACGGATAAGA ATGGGGAAGG GGAGGATACG
GAAATAGAAC TGGTACCGGT AGAAGGACTG GAATTATTGA TTCCGGCGAG GGACCAGCAC
GCCTATGGTG TACAGCGTGA TTATTTCGAT CATGCGAACT GTATCGGCTG GACACGTGAA
GGAGATGAAG AGCATACCGG TTGTGCAGTG GTCATTTCTA ATGGAGAAGA AGGGAATAAG
CACATGGAGA TCGGAAAGCG TTATGCCGGA AAGCGGTTTA AAGATATACT TGGCAAACGG
CAGGAGGAGA TTGTGGTGGA TGAAGAAGGA TGGGCTGAGT TCCTTTGTGC GGCAGGTTCG
GTATCTGTGT GGACATTAGC TGAATAA
|
|---|
| Protein sequence | MMQYFHWYTP EDGSLWNTVK KEAPKLAALG INAIWLPPAY KGADGASSRG YDVYDLYDLG
EFDQKGTVRT RYGTREEFEA AVKAIQESGM QVYVDVVANH LMGGDETEKV TVRKVDAENR
NEFISEPMEV EAYTRFTYPG RKGAHSDFVW DHQCFTGIDH VSNSDEEGIF TIQNEYGEGW
EEVIDTEKGN YDYLMGADIE FRNPAVREEF RRWGEWYYNA VKFDGFRLDA VKHITPSFFN
EWLDQMRQYT GRELFAVGEY WAPGQLDLLL KYIEATEGKM SLFDASLHHN FYDASLKGKD
YDLTTIFDGS LVQAKPFLAV TVIGNHDTQP LQALEAPVDY WFKPIAYALI LLREHGYPCV
FYPDLYGAKY TDKNGEGEDT EIELVPVEGL ELLIPARDQH AYGVQRDYFD HANCIGWTRE
GDEEHTGCAV VISNGEEGNK HMEIGKRYAG KRFKDILGKR QEEIVVDEEG WAEFLCAAGS
VSVWTLAE
|
|---|
| |