| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2143 |
|---|
| Symbol | |
|---|
| ID | 8358295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2624448 |
|---|
| End bp | 2625284 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644964327 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003121836 |
|---|
| Protein GI | 256421183 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATATCA GGAACCTCAC CCAGCAATTG GAGATCGACT ATGTGGTCAA GGATATCTGG
CCTTTTCTAT TGCATAAGCA TACACATTTT GAAATGCTGT ATATCATGCG GGGGAGAGGA
CAGCATATGA TCAACGGAAC GACCTATAAC TATGAAAAGG GCGATCTGTT TATACTGGTC
CCACAGGATA ATCATTTCTT TGTTTTTCAG GAACGCAGCG CTATTTGTAT CATGAAATTT
CATGAAGGGT ATTTCAGCGA TTTTCTGCAG GATGCGAAGT TTAAAGATCT GTTTACCGCA
TTGTCTTCTC CATACCGCAA GGTCTCTGCC GGCTGTAAAA ACAAACAGGA TATCATGCAG
CTGATGGAGC TGATCATACG GGAGCACCGG AAGGAAAGCG CCCATCAGCA GATCATTATA
AAACATGCTC TTTCTCTGAT CATTACACTG ACTGCAAAAG ATGCCGGTGA ACAATTATCG
ACTGCCAAAG ACGATAAAAT ACAGTCTGTG CTGAACTACA TCCACCAGCA TATCGCAGAT
AAACACCTAT TGTCTGTACA AAAGATGGCA GATACTTTTC ATATCAGTAA GAGTTACTTT
AACCAGTATT TCAAGAATGC TACCGGTAGC GCTTACAAAA AGTATGTACA GGAATATGCC
CTTAAACTGA TCGCCAGTCA GCTGGTAGGC AGAAATAAGA CACTGACCCA GTTAGCCGAG
GAATTTGGAT ATAGTGATGA AAGCCACCTG AACCGTGCAT TTAAGGCGCA TTTCAACCTT
AGTCCTTCTG CCTTTAAGAA ACAGCAGATG CGCCGATCTA TAGTTTATAC AGGATAA
|
|---|
| Protein sequence | MYIRNLTQQL EIDYVVKDIW PFLLHKHTHF EMLYIMRGRG QHMINGTTYN YEKGDLFILV
PQDNHFFVFQ ERSAICIMKF HEGYFSDFLQ DAKFKDLFTA LSSPYRKVSA GCKNKQDIMQ
LMELIIREHR KESAHQQIII KHALSLIITL TAKDAGEQLS TAKDDKIQSV LNYIHQHIAD
KHLLSVQKMA DTFHISKSYF NQYFKNATGS AYKKYVQEYA LKLIASQLVG RNKTLTQLAE
EFGYSDESHL NRAFKAHFNL SPSAFKKQQM RRSIVYTG
|
|---|
| |