Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_2076 |
Symbol | |
ID | 8358228 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 2534434 |
End bp | 2539656 |
Gene Length | 5223 bp |
Protein Length | 1740 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644964261 |
Product | YD repeat protein |
Protein accession | YP_003121770 |
Protein GI | 256421117 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGAATTA TAAATAAAGT AGTCTTATTC CTTATACCTT TTCTCTGCAG CTATTTATCT AGAGCTAAAG CGCAGACGAT AAGTGTTGAT CCTGGTACAA TTGCTCCAGA GAAATATGTT TTTGTAAAAG GAGATATCAT TTATATTAAA AATACCAGGT CTCCCGTAAG TATACAGACT CCGATGCCTG TTCAGATATG GGAAAAATCG ACTGATGGAA TGAACTGGGT GGCTATTAAT AATGGAAGGG GGAGTAATGA ATTACATGAA ATAGCAACCA CCACGGGAAC TATTTATTAC AGACGAAAGT TTTCATTGAA TTCTAACGAA GCTATCATAT CTGTTCAGGA AAAGTTAACA GGAGGTGAGA TATCCGGAGC GCAATACATT GCTCCAGGTG TTACCCCATC AGTATTAGGT AATGTGGCTG GCGCTACTGG AGGTGCAGGT GCTTATTCTT ATCAATGGGA ATATTCTGAT GACGAAACTA ACTGGACATT GATTAGCGGC GCTACAGCCC AGACTTATCA ACCAGCAGCA GTGACTGCTA CAAAGTATTT CCATCGGAAG GTAAGTTCTG GAGGTCAGGA GAGTTTCTCT AATTCAATAC AACTCTTTCT TAATAATAAT GTTACGCAGA ATGCGCCGGC AGCTACGACG GTTAACACTA CTGTGCCGGT TGTGGGCTTT CCTGGATATA GTGGACTTGT GACGGCTAAT CTGCGCAAAA GAACGACTGT GGATATTCTC AAACCCAATG TGGTAAACTG GGAGAATCCT GGTACGCCAT TGTCTGATGC GGATTATAGA AAACAGATTA CTTATCAGGA TGGTATTTCC CGTCCCATAC AAAGTGTTTA CTATAAGCGT AGTAGAAGCG GAAAAGATAT CGTGTCGCAA TCTGTCTATG ATAAATTTGG TGTTGAAAAG ATAACGCCTT TGCCTTATGT AGCTGCTACT GACGCCAATA ATGCAGGTCA GTTCCGTGTA GACGCTGGAA CAGCACAACA AGCCTACTAT AATACACTCA CTGCGGGTAA AGAAAGCCAC TTTTATTCCA CATATTCGGA AGAAAATTCA ATAGCTCCGA GGAATAGTAT AGGGAGTGGT CCGGGTAAGA GGGCGGCTGG AATAAATAAG GGGGCGAGGT CTGAATTGAG AGTGAATACG GTAGCTGACA AAGTAAGAAT ATGGGTAATA GGTGATAATG ATAATGATAT ACCTTCCAGT AGTGCATTAT ATGAGCCTGG TGCGCTTACT GTAAGCATTT ATACAAATGA CGAAGGTAAT AAGATCTATA CCTATACAGA TAAAGAAGGC CGTACAGTGC TTGAATCTGA CCAAAGAAAT GGTGCAGATA ATCCTGGTGA CGGTGCAAGA ACCTACTATA TATATGATGC TATAGGTAAT CTTCGTTATA TTCTTCCTCC TTTGGCGACA GCTTATTGTG TGGCTAATAA CAACTGGAAC TTTTCAGGAG CAACTTCAAT ATTAGAGCAA CTATCTACCA GATATCTATA CGATGTAAAA GGGCGTATAA TCAGTTCTCA AAAGCCAGGA ACGGACGGGC CGACATATAT GGTATATGAT AACAGGGACC GACTGATCTT CGCACAAGAT GCCAAATTGC GCTCCAATAA TAAAGGAGAA TGGATATTGT TTTTTTACGA CCATATCGAT CGTCAGGTAA TGCGGGCAGT ATATAAGAAC GCCAGTGCTA CGAGACCAAG TCTTCAGACT CAGATAGATG CAGCTGCTGC ATCTGCGAGA ACGACGTCTA TTACCATACC AGCAATCTCT GATTTGTACA TTGATAAACG TGAAGAAGGA GTATCATCCT ACATTGCAAA AAACTCGATA GTATTTATTG ACGGATTTGA AACAAACGTA AATGACGAGA TTGCAGCTGA TATAAATCCC AATGCTCCGG GGACTGTGGA GTCCAGACCC TTAAGTATCA TCCCTGGTTT TGACTATGGT AACTATGAGC CACTGGTAAC AGCCTACTAT GATAACTATA ATTGGTCAGG GGCTGCGAAA TTTAGTGATG ACTTTCAGGT AAGCGCGGGA AATAACAAAT ATCCGCTGAA TGTAGAACCT GACTATGAAG TTAAAGGGAT TCCGACCGGT TATAAAGTAA AAGTATTAGG CACAGATCAA TGGTTATCAA CAACATTTTT TTATGACCGT TATGGAAACG CTATTCAGTG TCAGTCTGAT AATATAAGCG GGGGTAAAGA TATTGTCACT TTCCAATATG ACTTTGCTGG CAATGTCCTT TCTGTCTATA GTATAGTTAA AAATCCTAAA GCTGTTACAC TGAACGAAGT GAGAACACGT GTCCGCAATG AATATGAGAA TGGTAGAATA ATGAAGGTCT ATCATGAAAT TGTGAACGGG CAAGCGGTTT CAAAGTTAGT GGGTGAGTAT GATTATGATG AATGGGGGCG CATTACCCAG AATAAGCTGG GAACACTTGA AACATTACAG TACGATTATG ATTTTCAGGG AAGGATAACT GGTATGAATG CGGCATATGC GAAAGATAAG TCAGCTGGCA ACTACTTTGG TATGCAGTTC TTTTATGATG ATGGCTTCCA GAATGGAAGA ACAGACGATA AGTTGTCTGG TGTAACATGG CGCAGAAAAG GCGATCCCGA TGAATGGCAT GCGTATGGCT TCGGATACAA CAGTGGAGGA GGGCTTGCAA AAGCTGACTA TACACAAAAT ACAGGTAGCA ACTGGAATAA TACCGATGTG GATTATAAAG TATACGATCT GGAGTATGAT GCAAACGGAA ATATCAAAAA ATTGAAACAG GATGGGATGT TACTGGGAAA GGTGAAATCA GGTATAGATG ACCTACAGTA TACATATGAT AATAATAACT GGAGTAATAC GCTTGTAGCT GTGGAAGATA GCAAAGGAAA CAAGCAGCAA GGTGATTTTA AAGATGGGGT ACATACAGCT GTAGAATACA ATTATGATGA AAATGGTAAT CTTATTAACG ATTTGAATAA GGGGATTACC ATTGTATATA ACTCATGGTT GAATAAACCA GAAAAGATAA CCTTTGACAA TGATGCCACT AAAAGTATAA GTTTTGTATA TAATGCTCAG GGACAGCGAT TACAAAGGAT TGTAAAAGAT GGTACAAATA CCTATACGTA TACTTATAAC AGTGGATATA TCTACAAGAA TGATAAGTTA CTTTTATTTC CCCAACCGCA AGGGCGGGTC CGTGTGAATG CTAACGGGCA AATGATATAT GATTATTTTA TTTCCGATAA TAGAGGGAAT ACCCGTACTG TAATTACAGA GGAAACGAAT GAGGTATACT ATAAAGCATC ACATGAAACT AATCCTCAGC CAACGCCTGC TATTCCGGAA AGGGAAAGTT TTAATTTCCC AAAATATGTA GATGTAATCC CTGCGGGGCA TAAGTTTTAT GATTATCAGG GAACTGGTAG CAACAGGCAG TTTGTTAAAT TGAACAGTGG TGATCCTGAT AGAAAAATTG GCACAGCGAA AGTCCTTAGG GTGATGGCAG GTGATAAAGT AGAAGTAGGA GTACAGTCTT ATTATGCTAA CAATTCGGTA TCAAACAATA CACCTAATGA ACTGCCGGAG ATAATTCTGA ATCAGCTTAT CAATTCTTTA CTAGGCCCTG TTGCCGTAAT TCCGAACGGA CATGATAATA TTCTTCAGGG AACGGGGAAT GGACTTATTC TCAATAAAGA GGATATGAAC ACATTCTTAC AGAATAAGAA CAACGCCAAT CCTCCATCGC AGGTTCCCAA GGCATATCTT AACTATGTAT TGTTTGACGA TAATTTTAAA ATGATTGAAG GCAACCCAGT AAGGGTCTCA TCTCCAGGGG AAATTATCCC ATTGACCGGG CAATTAGATG TCAGGAAAAA TGGTTATCTG TACGTTTATT TGTCAAATGA AAGCAACGCT GATGTTTATT TTGACGATCT GGTTGTCAAA CATACGAGTG GTCATTTGCT TCAGGAGGAC TCATACTATC CCTTTGGATT GCAGATGAGA GGGTTAAGTA GCCAAGCATT AAGCCGATTG GAGAATAATT ATCTTTACAA CGGTATTGAG AAAATATCGG ATTTTGATCT CGAGATTTAT GATGCTGCTT ACCGCAATCT TGATCCGCAG ACAGGTAGAT GGTGGCAGCA AGATCCTCTA CAGGAAACTA TGGTTAATTA TTCGCCATAT AACAGTAATT TCAACGATCC TATCAATTTT TCAGATCCTA ATGGAGACTC ACCGCTTGGA GTGTTCCTGG GCGCTACTGC GGGATTTGCT GTTGGAGCTA CTGCCGGTTA CATGATTGCA AACAATAATG GTTATGACAA GAAGACGACA ACACTTACAG GCGCAATTAT AGGAGGTGTT TTAGGAGGGG TTGCAGGAAA TTACGGAGGC GCAATCTTTA ATAATGATAA CAACGTATTA AAATGTTTTA ACTTCCAAAA AAAATGGATT GATGATCCTA GTTTCTTCCA AAGAATCGGT TACTATTTTC AACGGAGCGA AATAGGAACG GAGAAAACAA TTATGTTCAG ATTCAAAGCG GAGTATATAC GTAAAATTAA ACCTGACAAA CTTAAAATAG TCATAAATAA AGGACTTATA AACATACCTG TATTACCAGT TAGACCAATA TTTCAGGATA TACCAGACAA GGATCCTGTT GACGAAGAGA AGGGGGATGG TAAAAAGAAG GAGGAGGAAA AACCCGGGGG TGGGGGAGGA CCGCCGAAAG AGAAAGAAGT GATAAAAAGA ACATTCAGAT CAGCTGCGCC GACTCAGGAT CCATGGATTA CTTTGTCAAA GGAACAGGTA GATATGATGA ATCAGATAAT CAAACTTGCA AAAGAGGCAG GAAAGACCAA GGTTATACTA CTTTACAGGT CAACATCTTC TGAGGCATTT TTCCAGCTGA GTAAAAATTA TCGCCGGGAT GCGAATATGT ACGAAACATT TGATCCTAAA ACGGGATTAA GAATTGAGGA TATCGGTGGG CATAAGGGAA AGACTGACCA ACGGAAAATG ATTCTCGATC AGCAATTTGG AACTAATGGC TGGAATAATC TGATGGAACA AAGGGTAAAA ATGCTAGACT ATATGAAGAA TAAAGGAATG AAACCAACTG TTGAATTTAA AGCAAGCTCG AACTTTAACG GGTATGATGT GGAAATCCAA TAA
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Protein sequence | MRIINKVVLF LIPFLCSYLS RAKAQTISVD PGTIAPEKYV FVKGDIIYIK NTRSPVSIQT PMPVQIWEKS TDGMNWVAIN NGRGSNELHE IATTTGTIYY RRKFSLNSNE AIISVQEKLT GGEISGAQYI APGVTPSVLG NVAGATGGAG AYSYQWEYSD DETNWTLISG ATAQTYQPAA VTATKYFHRK VSSGGQESFS NSIQLFLNNN VTQNAPAATT VNTTVPVVGF PGYSGLVTAN LRKRTTVDIL KPNVVNWENP GTPLSDADYR KQITYQDGIS RPIQSVYYKR SRSGKDIVSQ SVYDKFGVEK ITPLPYVAAT DANNAGQFRV DAGTAQQAYY NTLTAGKESH FYSTYSEENS IAPRNSIGSG PGKRAAGINK GARSELRVNT VADKVRIWVI GDNDNDIPSS SALYEPGALT VSIYTNDEGN KIYTYTDKEG RTVLESDQRN GADNPGDGAR TYYIYDAIGN LRYILPPLAT AYCVANNNWN FSGATSILEQ LSTRYLYDVK GRIISSQKPG TDGPTYMVYD NRDRLIFAQD AKLRSNNKGE WILFFYDHID RQVMRAVYKN ASATRPSLQT QIDAAAASAR TTSITIPAIS DLYIDKREEG VSSYIAKNSI VFIDGFETNV NDEIAADINP NAPGTVESRP LSIIPGFDYG NYEPLVTAYY DNYNWSGAAK FSDDFQVSAG NNKYPLNVEP DYEVKGIPTG YKVKVLGTDQ WLSTTFFYDR YGNAIQCQSD NISGGKDIVT FQYDFAGNVL SVYSIVKNPK AVTLNEVRTR VRNEYENGRI MKVYHEIVNG QAVSKLVGEY DYDEWGRITQ NKLGTLETLQ YDYDFQGRIT GMNAAYAKDK SAGNYFGMQF FYDDGFQNGR TDDKLSGVTW RRKGDPDEWH AYGFGYNSGG GLAKADYTQN TGSNWNNTDV DYKVYDLEYD ANGNIKKLKQ DGMLLGKVKS GIDDLQYTYD NNNWSNTLVA VEDSKGNKQQ GDFKDGVHTA VEYNYDENGN LINDLNKGIT IVYNSWLNKP EKITFDNDAT KSISFVYNAQ GQRLQRIVKD GTNTYTYTYN SGYIYKNDKL LLFPQPQGRV RVNANGQMIY DYFISDNRGN TRTVITEETN EVYYKASHET NPQPTPAIPE RESFNFPKYV DVIPAGHKFY DYQGTGSNRQ FVKLNSGDPD RKIGTAKVLR VMAGDKVEVG VQSYYANNSV SNNTPNELPE IILNQLINSL LGPVAVIPNG HDNILQGTGN GLILNKEDMN TFLQNKNNAN PPSQVPKAYL NYVLFDDNFK MIEGNPVRVS SPGEIIPLTG QLDVRKNGYL YVYLSNESNA DVYFDDLVVK HTSGHLLQED SYYPFGLQMR GLSSQALSRL ENNYLYNGIE KISDFDLEIY DAAYRNLDPQ TGRWWQQDPL QETMVNYSPY NSNFNDPINF SDPNGDSPLG VFLGATAGFA VGATAGYMIA NNNGYDKKTT TLTGAIIGGV LGGVAGNYGG AIFNNDNNVL KCFNFQKKWI DDPSFFQRIG YYFQRSEIGT EKTIMFRFKA EYIRKIKPDK LKIVINKGLI NIPVLPVRPI FQDIPDKDPV DEEKGDGKKK EEEKPGGGGG PPKEKEVIKR TFRSAAPTQD PWITLSKEQV DMMNQIIKLA KEAGKTKVIL LYRSTSSEAF FQLSKNYRRD ANMYETFDPK TGLRIEDIGG HKGKTDQRKM ILDQQFGTNG WNNLMEQRVK MLDYMKNKGM KPTVEFKASS NFNGYDVEIQ
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