| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_2023 |
|---|
| Symbol | |
|---|
| ID | 8358174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2465228 |
|---|
| End bp | 2466241 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644964210 |
|---|
| Product | peptidase S41 |
|---|
| Protein accession | YP_003121719 |
|---|
| Protein GI | 256421066 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0793] Periplasmic protease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.127593 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACTCCC GGAGCTGCTG GTTAACAGTT ATTTATAGTG TTTTTTGCAT CGCTGCCTAT
GCACAGGCGC CTGCTAAAAA AGAGATCGCT GATGCGGTGG ATAAAATGGC GGTCCTTTTG
AAGGAAAGAT ATGTTTCGGA GGAGAAGGGA TTGGCGATTG CCGCTTACTT ACGAACAGCG
CTGCAGACAG GTAAATTTAC GAATGTGAAA AGCTGGCAGG AGTTTGCACA GCTGGCGACT
ACAAGCTTGC AGGACTTTAG TCATGACGGG CATCTGTATG TCAGAAATGA CCCCATGAGG
TGCCAGGAAT TATTAGCCGC AGATAAAGCC GCACTGCCGG CAACGGCGGT TGGTAATACG
TCGGGTGAAG ATCCTTTCTT TTACAGTCCG GTAGCAGCAG ATCATAACTA TGGTTTTGAA
AGTGTGCGTA TTGCTGCCGG TAACGTGGGG TATCTGCATC TTTCGGAAAT CAATATTTCC
CGTAAGAGTC TTTCAACATT ATATGCGGCG ATGGCATTTG TCGCCCATAC AAGCGCCTTG
GTCATAGACC TGCGGAATAA CGGTGGAGGA GGAAGTGATA CAGGGGCTGT CTTTGAAAGC
TATTTTCTGC CGTCAGAAAC GCCTTTACTG ACCTTTACCA GCCGTACAGG CGAACATACC
ACTGATAGCA CGGTAACGTG GCTAAAAGAG CCGCATTATG AGCGTCCTGT GTTTATCCTG
ATCAATCGTA AAACAGCATC GGCCGCAGAG GCGTTTGCGT TTGTCTTGCA GAAAATGAAA
AGAGCGACGG TAATCGGAGA GCCGTCTGCC GGTGCAGCGA ATATGAATGT ATGGTTACCG
GTGAATAAAG ACATTTTTAT TTCGGTGTCA GAAATGGCGC CGGTATGGCA TGGTACGACG
GACAGCTGGG AGCAGCGGGG CGTACAGCCG GATTGTGCGG CGCAGACGGA AGCAGCGATC
GATGCGTGTA TTCACGATAA GATCGGACGG CCGAAGTTCA GACCCGTCCA TTAA
|
|---|
| Protein sequence | MYSRSCWLTV IYSVFCIAAY AQAPAKKEIA DAVDKMAVLL KERYVSEEKG LAIAAYLRTA
LQTGKFTNVK SWQEFAQLAT TSLQDFSHDG HLYVRNDPMR CQELLAADKA ALPATAVGNT
SGEDPFFYSP VAADHNYGFE SVRIAAGNVG YLHLSEINIS RKSLSTLYAA MAFVAHTSAL
VIDLRNNGGG GSDTGAVFES YFLPSETPLL TFTSRTGEHT TDSTVTWLKE PHYERPVFIL
INRKTASAAE AFAFVLQKMK RATVIGEPSA GAANMNVWLP VNKDIFISVS EMAPVWHGTT
DSWEQRGVQP DCAAQTEAAI DACIHDKIGR PKFRPVH
|
|---|
| |