| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1993 |
|---|
| Symbol | |
|---|
| ID | 8358144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2431700 |
|---|
| End bp | 2432482 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644964181 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_003121690 |
|---|
| Protein GI | 256421037 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.750053 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTTG GATTAAAAGA CAAAGTATTT ATAGTAACGG GTGGTGCAAA AGGAATAGGA
GAGGCGATAT CCAAACTGAT TGCCGCTGAA GGTGGTATTA CTGTTATTGC CGGCAGAAGC
ACGGAGGATA ACAATAAAAC TGTTGAAGCG ATCATCGCTG CCGGCGGACA GGCAGTAGAA
GTTACCGCTG AACTGGGAGA AGCAGATGCC TGCAAACGTG TGATTGATTT CACTGTACAG
CGTTTCGGAC GTATTGACGG ACTGGTAAAC AATGCCGGTG TGAATGATGG GGTAGGACTG
GAAAGTGGTA GCCCGGAGAA ATTTATGGCT TCATTGCAGA AGAACATCTC CCATTACTAC
AACCTGGCGC ATTACGCATT GCCATACCTG AAACAAACAA AAGGTAATAT TGTCAATATC
GGATCTAAAG TGGCGGATAC CGGTCAGGGT AATACTTCCG GTTATGCAGC ATCCAAAGGT
GGTATCAATG CGCTGACACG TGAGTGGGCG GTGGAACTGC TGCCTTATGG TATTCGTGTT
AATACAGTGA TCCCTGCGGA AGTATGGACG CCGCTGTATG AAACCTGGAT CAATTCTTTA
CCTAATCCGG ACGAGAAACT GGCTGCTATT GTTGCCAAAA TTCCTTACGA AAAACGTATG
ACTACATCCG AAGAAATAGC GAATATGACC GTATTCCTGT TATCAGGTGT GTCTTCTCAT
ACCACCGGCC AGATCGTGTA CGTGGATGGT GGTTATACAC ATCTGGACAG ATCCATCAGC
TAG
|
|---|
| Protein sequence | MDLGLKDKVF IVTGGAKGIG EAISKLIAAE GGITVIAGRS TEDNNKTVEA IIAAGGQAVE
VTAELGEADA CKRVIDFTVQ RFGRIDGLVN NAGVNDGVGL ESGSPEKFMA SLQKNISHYY
NLAHYALPYL KQTKGNIVNI GSKVADTGQG NTSGYAASKG GINALTREWA VELLPYGIRV
NTVIPAEVWT PLYETWINSL PNPDEKLAAI VAKIPYEKRM TTSEEIANMT VFLLSGVSSH
TTGQIVYVDG GYTHLDRSIS
|
|---|
| |