| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1812 |
|---|
| Symbol | |
|---|
| ID | 8357963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2215739 |
|---|
| End bp | 2216719 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644964000 |
|---|
| Product | Pectinesterase |
|---|
| Protein accession | YP_003121509 |
|---|
| Protein GI | 256420856 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4677] Pectin methylesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAT GCTTTCTTAT AATTTTGTTT CCGTTTTTTT TGTTCTTAAC TGCCTCCCTG
CGCGCACAGG ATCCCCGTGC TCGTCTGGTA GTGGCAGCGG ATGGAACAGG CGATTATAAG
ACGATCCAGG AGGCGGTGAA TGCAGTCAGG GATTTTACTT TATTCCGGGT GACTATTTTT
ATCCGTAAAG GTATATATCA CGAAAAGCTA TGTATTCCCA GCTGGAAATG TACAATTACC
TTACAGGGGG AGGACAGGGA CAGTACGGTC ATTACCAATG CAGATTATTC AGGAAAAGTA
TATCCTGGGA AGGATGCATC CGGGAGGGAT AAATTCGGCA CATTTACCTC TTATACTGTA
TTGGTAGCCG GAGACGATAT CATTGCCGAA AACCTCACTT TTGAAAATGC TGCGGGTCCG
GTAGGACAGG CAGTTGCGCT TCATGTGGAA GGGGATCGTT GCCGGTTCCG TAATTGCAGG
TTGCTGGGCA ACCAGGATAC CTTATATGCC GGAAAAGAAG ATAGCAGGCA GTATTACCAG
GATTGTTACA TAGAAGGCAC GACCGATTTT ATATTCGGTG CTGCGACGGT ATGGTTTGAA
GGCTGTACGA TCCACAGTAA AAGAGATTCT TACATTACAG CCGCTTCTAC GACACAACGG
CAACCTTACG GGTTTGTATT CAACCATTGT AAATTAACCG CAGACAGCGT CGCTAAAAAG
GTGTTTCTGG GGCGTCCCTG GAGACCTTAT GCAGCAACTG TCTTTATGAA CAGCATCCTG
GGGCCGCAGA TACTAGCGCA GGGCTGGCAT AACTGGGATA AGAAAGAAAA TGAACTGACT
GCGAGATATG CTGAGTATCA TAATACGGGT GCCGGCGCAA CGCATGATAA GCGTGTGGCC
TGGTCCCGGC AGTTACCGGC GCAGTCGGCA AAAGATATTA CACTCACTAA AGTATTTGGC
AATTGGGATC CGTTAAAGTA A
|
|---|
| Protein sequence | MKKCFLIILF PFFLFLTASL RAQDPRARLV VAADGTGDYK TIQEAVNAVR DFTLFRVTIF
IRKGIYHEKL CIPSWKCTIT LQGEDRDSTV ITNADYSGKV YPGKDASGRD KFGTFTSYTV
LVAGDDIIAE NLTFENAAGP VGQAVALHVE GDRCRFRNCR LLGNQDTLYA GKEDSRQYYQ
DCYIEGTTDF IFGAATVWFE GCTIHSKRDS YITAASTTQR QPYGFVFNHC KLTADSVAKK
VFLGRPWRPY AATVFMNSIL GPQILAQGWH NWDKKENELT ARYAEYHNTG AGATHDKRVA
WSRQLPAQSA KDITLTKVFG NWDPLK
|
|---|
| |