| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1746 |
|---|
| Symbol | |
|---|
| ID | 8357896 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2115672 |
|---|
| End bp | 2116979 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644963933 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_003121443 |
|---|
| Protein GI | 256420790 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.147436 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTGT TTCAATATAA GAATGGCGTA CTGTATTGCG AGGATGTTCC CGTAGACAGT
CTGCCGGCCA AGGGCCTTCC GACTCCTTTT TACCTGTATT CTGCGAACAC GCTCAGGTTG
CATTATAAGA AGATTTATGG TGCTTTTGAG AAGCTGGATC CTGTCATCTG TTTTTCGGTA
AAATCGAGTA ACAATGTTCA CCTGCTGAAT GAACTGGCAG CCCTGGGCGC CGGTATGGAT
ATCGTGAGCG GGGGAGAGCT GTTTGTGGTG AAACAGAGCA ATGCTGACCT GTCTAAAGTA
GTTTTTGCAG GTGTAGGTAA ATCTGATGAA GAAATCACGG ACGCCATCCT GAGTGAGGTG
GGTTATATCA ATATCGAGTC AGAACAGGAA CTGGCAAGGG TACAGGAACT GGCAGGCGAC
CTGAAAAGAG AGGTGAGTGT ACTGATCCGC ATACAGCCGG ATATCACCGA CGAAAAGACC
AATGAAAAGA CCCGGACAGG TTATAAAGGT GCAAAATTCG GGATTGATTA TGCAAACGTG
GAAGCGCTGA TAGAAGAGAA TGCAGATCAT CCTTTTGTGA AAATCAAAGG ACTGCATTGT
CATATTGGTT CACCGATATC TTCTTATACA TTTTATGAAG AATGTATCCG TAAGATGGTA
GGTCTGACGG AGTCTTTGAA GCAGAAGAAT ATCATCCTGA AAGTATTGAA TATCGGAGGT
GGATTTCCTG CTAATTACAT GGATAACGAC AATTTCTCCT GGGAGAGTTT TGCCGGTCCG
ATCATTGAAT TACTGGAGCC TTATGTGAAA AAGGAAGGAT TTAAGATCAT CCTCGAACCG
GGAAGGTCTA TTTCTGCGAA TACAGCGGTC CTGGTCACCA GGGTACTCTA CGTTAAAAAA
TCCGGCGACA AAAATATCGC GATACTGGAT GCCGGTATGA CGGAACTGAT CCGTCCGGCG
ATGTACAATG CCTTTCATTT CATATGGCCG GTTAAGCCGG AGGCACAGCA CCTGCTGACT
AACAGGAACT ATCCGGTAGA ACAGGAAGGA TTGACAAATT ATGACGTGGT AGGGCCTATC
TGTGAATCGT CCGATTACCT GGCGAAGGAA CGTGCTTTGC CGCCATTACA GCAGGGAGAT
TATGTAGCCG TATTTACTGT AGGCGCCTAC GGCATGGTAA TGGCCAGCAA TTATAACCTG
CATGTGAGAC CCGCTGAAGT AATGATTGAT AAAGACAAAA TATATATCAT CAGGGAACGT
GAAACCCAGC AGGACCTGGT GAGAAAAATG ATCAGACACG AACTGTAA
|
|---|
| Protein sequence | MDLFQYKNGV LYCEDVPVDS LPAKGLPTPF YLYSANTLRL HYKKIYGAFE KLDPVICFSV
KSSNNVHLLN ELAALGAGMD IVSGGELFVV KQSNADLSKV VFAGVGKSDE EITDAILSEV
GYINIESEQE LARVQELAGD LKREVSVLIR IQPDITDEKT NEKTRTGYKG AKFGIDYANV
EALIEENADH PFVKIKGLHC HIGSPISSYT FYEECIRKMV GLTESLKQKN IILKVLNIGG
GFPANYMDND NFSWESFAGP IIELLEPYVK KEGFKIILEP GRSISANTAV LVTRVLYVKK
SGDKNIAILD AGMTELIRPA MYNAFHFIWP VKPEAQHLLT NRNYPVEQEG LTNYDVVGPI
CESSDYLAKE RALPPLQQGD YVAVFTVGAY GMVMASNYNL HVRPAEVMID KDKIYIIRER
ETQQDLVRKM IRHEL
|
|---|
| |