| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1740 |
|---|
| Symbol | |
|---|
| ID | 8357890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2108192 |
|---|
| End bp | 2109199 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644963927 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003121437 |
|---|
| Protein GI | 256420784 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03519] Bacteroidetes-specific putative membrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAACTT TTACCAAAGC ATTGTTGATG CTGTGCTTAG TGGGCCTGAC CGGTAAAAAG
CTGCAGGCGC AATCCGACCC GCACTTCTCC GGTTACTATG TGTATCCGGC ATGGTTGAAT
CCTGCGCTGA CAGGTGTATT TGATGGCGAC TACCGTGTAT CTGCCATCTA TCGTTCTCAG
TGGGGAAGTG TGAGCAGCCC TTTTAAAACC TATGGTATTG CAGGAGAAGT GAAGACGAAT
AACAATATCA ACTTCGGCGC CAGTGTACTG AATCAGAAAG CAGGAGACGG AGGATATAAC
TATACGACTG CCTATGGTAG CGCTTCTTAT ACAGGTGTAC GCCTGGGTGC ATTCGAACAA
CACAGGCTGG TATTTGGTCT CCAGATGGGA CTGATCCAAC GCAGATTTGA TCCGGCTAAA
CTCCACTTTG GTGATCAATG GAATCCTATC ACTGGTTACA ATCCTGGCCA GGCTACCAAT
GACATGTTCA ACAAAACAAC TTCCGCCGCT TTTGATGCAG GCGCCGGTGT ATTGTACTAT
GATGCACAGC CGGGTAAGAA ATATAATCTC TATGGTGGTT TTTCTGTCAT GCACCTGAAT
AAACCAAGTG ATCAGTTCAG CGCTACCGGC GATGCCCGCA TCCCTATGCG TACCACTGCA
CATGCCGGTG TAAGAGTGAC CATTTCAGAA CTGTTCAGCC TCACGCCCAA CGTCCTGTAT
ATGAAGCAGG GTGCAGCGTC TGAGAAGATG CTGGGTGCTT ATGGTCAATA CGCTGTATCA
GCTGAAACAG ATGTCATGCT GGGGGCTAAC TATCGTCTCA AAGATGCATT CTCTGTCTAT
ACAGGGGTAA GCTATAAAAG CTTTATGCTC GGATTGAGCT ATGATGTCAA CTCTTCTGAT
CTGGGTAAGA TCACCAGGGG TAATAACAGC TTCGAACTCT CTTTATCATT CATTGGCAGG
AAGTCAGTGA AAACACCAGC CGGTGATTTC GTTTGCCCAA GGTTATAA
|
|---|
| Protein sequence | MRTFTKALLM LCLVGLTGKK LQAQSDPHFS GYYVYPAWLN PALTGVFDGD YRVSAIYRSQ
WGSVSSPFKT YGIAGEVKTN NNINFGASVL NQKAGDGGYN YTTAYGSASY TGVRLGAFEQ
HRLVFGLQMG LIQRRFDPAK LHFGDQWNPI TGYNPGQATN DMFNKTTSAA FDAGAGVLYY
DAQPGKKYNL YGGFSVMHLN KPSDQFSATG DARIPMRTTA HAGVRVTISE LFSLTPNVLY
MKQGAASEKM LGAYGQYAVS AETDVMLGAN YRLKDAFSVY TGVSYKSFML GLSYDVNSSD
LGKITRGNNS FELSLSFIGR KSVKTPAGDF VCPRL
|
|---|
| |