| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1734 |
|---|
| Symbol | |
|---|
| ID | 8357884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 2087922 |
|---|
| End bp | 2091332 |
|---|
| Gene Length | 3411 bp |
|---|
| Protein Length | 1136 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644963921 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003121431 |
|---|
| Protein GI | 256420778 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTAC CTATACATGG TAATCAATTG CCGGCGTCTC TAAAAAAGCG CCGGAGGGGA
ATTATTACGG TTACAATACT GCTATTACTA TCCGGCGCAG CACATGCTGC CGGAACCAAC
CATGCGGCTG ACAGCCGTAT CGTAAGAGAT TCTATGCCTA TGGGTCTGGC AAAAGGAAGA
GTGACCGGTG CGGAAGAGAA AGTAGCCCTG CCTAATGTAT CAGTAGTCAA CCTGTCTACC
AAAAAAGGTA CCGTGACGAC TGTTGATGGT AATTTTACAC TGAGCGCCCG TTCCGGTGAT
AGCTTACGTT TTTCTTTTAT TGGTAAGAAA GCTCAGGTCG TACTGTTCAC TGGTCAGGCT
GTAGTGAACG TCCTGCTCAG TGGTACGGAA GGTTCATTAT CAGAAGTAGT AGTGACTGGT
TTCCAGAATA TTGATAAGAA GAAATTCGCG GGTTCTGCCG TATCTATCAA AGCAGAAGAC
GTAAGGATAA ATGGTGTGGC AGATGTAAGC CGTATGCTGG AAGGCCGTGT AGCGGGTGTG
TCTGTACAGA ACGTGTCCGG CACATTTGGT ACTGCACCTA AGATCCGTAT ACGTGGCGCT
ACCTCTATCA ACGGTGATAA CAAACCATTG TGGGTAGTAG ATGGTGTGGT ACTGGAAGAT
GTAGCCAATA TCTCCAACGA TCAGTTGTCC AGCGGAGACC CTACCACCTT GCTGGGTTCT
GCTGTAGCAG GTTTGAACTC TAATGACATT GAAAGTTTCG ATATCCTGAA GGATGCTGCC
GCAACGGCGT TATATGGCGC CCGCGCAATG AACGGTGTAG TGGTGATCAC TACCAAAAAA
GGCCGTGCAG GTAAACCTGC TATCGCCTAT AGCGGCAACT TCAGTACACA ATTGAAACCT
ACCTATGGAA ACTTTAATAT CATGAACTCC GCCAGACAGA TGTCTGTGCT GGCGGAGCTT
GAGCGTAAAG GTGTGCTGAC ATCCGATATT CTTTCCCGTG GCGACGTAGG CGTATACGGA
AAGATGTATG ATATGTTGCA GACCGACGTG AATGGCCACT TCGGACTGGA GAATACGCCT
GAAGCACGCA AAGCTTTCCT GATGCAATAT GGCAGAGCAA ACACCGATTG GTTTGATATC
CTGTTCCGCA ACAACTTTGT ACAGGAACAT TCTATCAGCG TATCATCCGG TACGGATCGC
TCCCAATCTT ATTTCTCCAC CAGTTACTAT GGTGATAACG GCTGGACAAT AGCAGATAAA
GTACATCGCT ATACCCTGAA CTACCGTAAC AACTATAAAT TCTCTGACCG GTTCTCTGCC
GGTTTCTCTA CACTCGGTTC TGTACGTCAG CAGAGAGCGC CGGGCGCACT CACGCGTAAT
AGTAATCCAG TAGAAGGTCA GTATGACCGT GACTTCGATA TCAACCCTTT CAGCTACGCA
CTGAATACCA GCCGTACCCT GAGAGCATAT GACGATAAAG GTAACCTGGA ATACTTCAGA
CGCAACTTCG CTGATTTCAA TATCATTAAC GAACTGCAAA ATAACTACCT GTCCCTGAAT
GTAATGGACC TGCGTCTGCA GGGAGATCTG GGCTGGAAGA TCACAGATAA ACTGAAATGG
GAATTTGTAG GTGCACTGCG TTATGTGAAG TCTTCCCGTG AACATCAGAT CACAGAAGAC
GCCAACATGG CTAACGCTTA CAGAGCGGCA GACAATGCCA CTATCGCGCA GAATAATAAA
TTCCTGTACC GTGATCCGGA GAACCCGGAT GCCCCGCCGG TGATTGTATT ACCAGAAGGA
GGCTTCTATA ACAGAACAGA AGACCAGCTG GTAAACTATG ACTTCCGTAA TACCCTCAGC
TACAAAACTA CTTTCGGTAG CAATCATAAC CTGAACATCC TGGCAGGTCA GCAGGTAAAA
TATGCCGACA GACAAAATGC ATCCAGCACG GGTTATGGTT ACCAGTACAA CAATGGCGGT
GTGCCTTACA TCGATTATCG TGTACTGAAA CAAACCATTG AAAGCAACTT CCCCTATTAT
GGTATGGCGC GTGACTATGA CAGGTTCGCC GCTTTCTACG GTACTGCTGA TTACTCTTAT
GCCGATAAAT ACAGCATCAG CGCTAATGCC CGTTACGATG GTTCCAACCG TCTGGGTGCT
TCTTCCAATG CAAGATGGCT TCCTACCTGG AGCTTCGCCG GTCGCTGGAA CCTGGACAGA
GAAGACTTCA TGCGTGACTT CCGTCATGTA GATTATCTCT CCGTACGCGC CAGCTATGGA
CTGACTGCAA GTATGGGCCC TGCTACCAAC TCTAACATCG TTTATCGGAC GGTGAACAGC
CGCCGTGCAC ACCTTAATGA AGTGGAATCT GTTATCCAGC TGGCGCACCT GAAAAACACT
GAATTAACAT GGGAAAAGTT ATATACTTCC AACGTGGGTG TAGAAGCCGG TTTCTTAGAC
AGACGCCTGA ACATGACCCT CGACCTTTAC AGCCGTAAAA GTTTTGACCT GATCAGCCTT
ATCAAAACAT CCGGTATCGG TGGTGAACTC TACAAGGCAG CCAACTATGC AGACATGACT
TCCAAAGGTA TCGAAGTGAT GGTAGGTGGC GAGATAATCC GCCAAAAACA CTGGGGATGG
AGAACCAACC TGACCTTCGG TTATAACACC AACAAGATCA CCAACGCGAA AAACTCCCCG
CTTATCTTTG ACCTGGTAGC TGCTGAAGGT GGTAACAAAG AAGGATATCC TGTACGCAGC
CTCTTCTCTC TCGACTACAA AGGGCTGGAC CCGCGCACGG GTGTGCCGAC TTTCGTTACA
GGGGATGGTA AGACCAGTTC AAACGTAGAC CTGCAGGATG ATGCAACCGG TACGCTGGTG
TACCAGGGAC CTGTAGATCC GCCGGTAACA GGTGGTCTGA ACAACACCTT CCGTTACAAA
GCATTCTCCC TGAATGTATT CATGACTTAC CAGTGGGGTA ACAAGATCCG CCTGTATCCT
GCTTTCAAAA CAGCTTATTC TGATCTTGAC GCGATGCCAA ATGAATTCTA TGACCGTTGG
GTAATGCCGA AAGATGAGAC TAAAACAGAT GTACCGTCTA TACTCGACGC ATATGAGCAG
ACACTGCTCG GTGGTGCATA TCCTTACAAC AACTATAACT ATTCAACAGC GCGTGTAGCA
AAAGGAGATT TTGTTCGTCT GAAAACAGTA TCCATGACTT ACCTGCTGCC GGCCAGCTTC
CTGAAGAGAA CAGGTTTTAG CAGTCTGCTG GTAACAGCTG CTGCGAATAA CATGTGGCTG
ATCTATTCGG ACAAAACACT GAAAGGACAG GATCCTGAGT TCTTCAACGC CGGAGGTGTG
GCGCAGCCGA TACAGAAGCA GTTTACATTA TCTCTTAAAG TGGGCATTTA A
|
|---|
| Protein sequence | MTLPIHGNQL PASLKKRRRG IITVTILLLL SGAAHAAGTN HAADSRIVRD SMPMGLAKGR
VTGAEEKVAL PNVSVVNLST KKGTVTTVDG NFTLSARSGD SLRFSFIGKK AQVVLFTGQA
VVNVLLSGTE GSLSEVVVTG FQNIDKKKFA GSAVSIKAED VRINGVADVS RMLEGRVAGV
SVQNVSGTFG TAPKIRIRGA TSINGDNKPL WVVDGVVLED VANISNDQLS SGDPTTLLGS
AVAGLNSNDI ESFDILKDAA ATALYGARAM NGVVVITTKK GRAGKPAIAY SGNFSTQLKP
TYGNFNIMNS ARQMSVLAEL ERKGVLTSDI LSRGDVGVYG KMYDMLQTDV NGHFGLENTP
EARKAFLMQY GRANTDWFDI LFRNNFVQEH SISVSSGTDR SQSYFSTSYY GDNGWTIADK
VHRYTLNYRN NYKFSDRFSA GFSTLGSVRQ QRAPGALTRN SNPVEGQYDR DFDINPFSYA
LNTSRTLRAY DDKGNLEYFR RNFADFNIIN ELQNNYLSLN VMDLRLQGDL GWKITDKLKW
EFVGALRYVK SSREHQITED ANMANAYRAA DNATIAQNNK FLYRDPENPD APPVIVLPEG
GFYNRTEDQL VNYDFRNTLS YKTTFGSNHN LNILAGQQVK YADRQNASST GYGYQYNNGG
VPYIDYRVLK QTIESNFPYY GMARDYDRFA AFYGTADYSY ADKYSISANA RYDGSNRLGA
SSNARWLPTW SFAGRWNLDR EDFMRDFRHV DYLSVRASYG LTASMGPATN SNIVYRTVNS
RRAHLNEVES VIQLAHLKNT ELTWEKLYTS NVGVEAGFLD RRLNMTLDLY SRKSFDLISL
IKTSGIGGEL YKAANYADMT SKGIEVMVGG EIIRQKHWGW RTNLTFGYNT NKITNAKNSP
LIFDLVAAEG GNKEGYPVRS LFSLDYKGLD PRTGVPTFVT GDGKTSSNVD LQDDATGTLV
YQGPVDPPVT GGLNNTFRYK AFSLNVFMTY QWGNKIRLYP AFKTAYSDLD AMPNEFYDRW
VMPKDETKTD VPSILDAYEQ TLLGGAYPYN NYNYSTARVA KGDFVRLKTV SMTYLLPASF
LKRTGFSSLL VTAAANNMWL IYSDKTLKGQ DPEFFNAGGV AQPIQKQFTL SLKVGI
|
|---|
| |