| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1144 |
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| Symbol | |
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| ID | 8357260 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 1365300 |
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| End bp | 1366406 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644963300 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_003120843 |
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| Protein GI | 256420190 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000422764 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.160912 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAAGA TATATCGTCC CGCTCTGTTG ATCGTTGCAC TCATGGCTGC CTGTGGCAGT
CCTTCGCCGG AGGAAAAACT GGCGGAGCTT AAAAAAGAGG AAGCTACCCT GAAACAACAG
ATCGCTGAAC TGGAAAAACA AACACAGAAA AAGGATACTA CTGAACGTAA AAAGAAAGCC
GTGGTCGTTG CGGACGTACA GGATACAGTA TTCGAACATT ATATCGATGT ACAGGGTGCT
GTAGATGCGC GTGAGAACGT CAGCGTATCT GCTAAAATTC CTGGTATCGT TACAGCAATA
CATGTAAAAG AAGGACAGAA CGTAAGTAAA GGACAGTCAC TGGCTCAGGT TGATGATCAG
ATCATGAGGG CGAATATGGC GGAACTGCGT ACACAGCTGG ACCTGGCAAA TACCATGTTC
CAGAAACAGC AGAACCTCTG GAATCAGAAA ATCGGTTCTG AAGTACAGTA CCTGAATGCA
AAAACACAGA AAGAATCACT GGAAAGGAAA ATGGCAACCC TGCAGGATCA GATGTCTCAG
GCAAGGATCA TTTCTCCTAT CAATGGTACA GTGGATGCGG TGATCGTTAA ACTGGGTGAT
AATGCGGCTC CTGGTAGTCC GGCGTTCCGC GTGGTAAACG GCAGCAACCT GCGTGTACTG
GCGAATGTAG CAGAAGCTTA TGCCAGCAAA GTAAAAACCG GTGATCAGGT AGTGCTGGAA
TTCCCGGATA TCGAAAAGAA CATTCGTACT AAAATCGGTT TTGCTTCAAA GGTGATTGAT
CCGACAAGCC GTACTATAAA ATTAGAAGTG CCTTTACAGA ATGATCCGGA ACTGCGTCCT
AACATGATCG CAAGAATGAA GATCATCGAT TACGTTGCAC AGAAAGCAGT TGTAATACCG
GTGAATATTA TACAGTACTC ATTAGGTAAA CCTTATGTGA TCGTTGCACA GAATCAAAGC
GGTAAGATGA TAGCGAAAAG AAGAGAGATC GGAATGGGCC GCACTTATAA TGATAAGGCA
GAGATCACAA GCGGACTGCA GACAGGTGAC AAGATCGTAA CTATCGGTTA CCAGGGATTG
AATGATAATG ACCTTATCCA GCTTTAA
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| Protein sequence | MSKIYRPALL IVALMAACGS PSPEEKLAEL KKEEATLKQQ IAELEKQTQK KDTTERKKKA
VVVADVQDTV FEHYIDVQGA VDARENVSVS AKIPGIVTAI HVKEGQNVSK GQSLAQVDDQ
IMRANMAELR TQLDLANTMF QKQQNLWNQK IGSEVQYLNA KTQKESLERK MATLQDQMSQ
ARIISPINGT VDAVIVKLGD NAAPGSPAFR VVNGSNLRVL ANVAEAYASK VKTGDQVVLE
FPDIEKNIRT KIGFASKVID PTSRTIKLEV PLQNDPELRP NMIARMKIID YVAQKAVVIP
VNIIQYSLGK PYVIVAQNQS GKMIAKRREI GMGRTYNDKA EITSGLQTGD KIVTIGYQGL
NDNDLIQL
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