Gene Cpin_1141 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1141 
Symbol 
ID8357257 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand- 
Start bp1362113 
End bp1362757 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content44% 
IMG OID644963297 
Productprotein of unknown function DUF502 
Protein accessionYP_003120840 
Protein GI256420187 
COG category[S] Function unknown 
COG ID[COG2928] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.280818 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.107608 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCCTA AAAGTCGTCT TAAAGTTCTG GCAGCACGCA TACTGAGGTA TTTCTTCCAG 
GGTTTACTGA TACTCGCTCC TATGGGTGTA ACCGCCCTGA CGCTGTACTG GGTATTTGTT 
ACTATTGACA ATATCATCCC AAAGGAAATT CTGCCGCTGG AAACGCCGCT CAGATACCTC 
CGCTATAAAG GCGTCGGATT TGTATTGGTA TTGTTACTGG TGATTGTAGT AGGTTATCTG 
AGTTCCTCCT TTATTGTGAG CCGCATCTTT GCATTGTTTG ATCACATGCT GGAAAGGACG 
CCTTTTATTA AATATATCTA TACTTCTGTA AAAGATGTGT TTGACGCATT TGTGGGTGAG 
AAAAAGAAGT TCGATCATCC GGTACTGGTG CAGATATATG GCGAAGATGT TTGGGAAATG 
GGTTTTATTA CACAGCCTGA TATGTCTAAC TTTGGACTTG AGGGATATAC TGCGGTATAT 
GTACCACATG CTTATGCCAT TACCGGTAAG GTATTTATGG TGCCTGTCGG CAAGGTGAAA 
CCGCTGACCA ACATTTCTGC CGGCGAAGCG ATGAAGTTTG CCGTAAGTGG TGGTGTGACC 
AACATCGAAG TACACGACAA GCATGAAAAG AAAGAGGTAC GCTGA
 
Protein sequence
MSPKSRLKVL AARILRYFFQ GLLILAPMGV TALTLYWVFV TIDNIIPKEI LPLETPLRYL 
RYKGVGFVLV LLLVIVVGYL SSSFIVSRIF ALFDHMLERT PFIKYIYTSV KDVFDAFVGE 
KKKFDHPVLV QIYGEDVWEM GFITQPDMSN FGLEGYTAVY VPHAYAITGK VFMVPVGKVK 
PLTNISAGEA MKFAVSGGVT NIEVHDKHEK KEVR