| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1005 |
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| Symbol | |
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| ID | 8357119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 1207715 |
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| End bp | 1209445 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644963159 |
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| Product | transcription termination factor Rho |
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| Protein accession | YP_003120704 |
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| Protein GI | 256420051 |
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| COG category | [K] Transcription |
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| COG ID | [COG1158] Transcription termination factor |
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| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.297296 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGTACG ACATCTTACA ATTGAACGAC ATGCTCGTTC CTGAGCTGCT TGACATTGCA
GAGAAACTCG ATGTGCCAAA CGCCAAAAAA CTGAGCAAAC AGGATCTTAT CTACAAAATA
CTCGATAAGC AGGCAGTAAT GGCCTCTGAA GGTAACCCGG CAAATGGTGA AGAAAAGAAA
ACACGTAAAC GTAAGACTAA AAAGGAAGAA GAAGCTGAAG AAGCACCTGT AGCAGAGACC
ACAGCTGCAG ACGAAAAACC AAAACGTGGC AGAAAACCAG CTGCCAACGG CCTTAAATCA
AAAGAAACAG AATTTGAAGA ACCTAAGGCG CAGGACACCA AACCAAAGAA AAAGAACTTC
GATATAGACT TAGATATCCC CTCTCTTACT TTCGATGACG ATGATGATGT AATCATCCCG
CAATTCACTG AAGATATTGA AGAAGAGGAA GAAGAGGAAG ATGTAATTAC CACTCTGCCC
AATGCTCAGG AAGCAGAAGA GGAAGAGGAA GAAGACGACG AAGACGAGGA TGATTTTGTA
ATGCCGGAGG AGCCGGTACT GGCGCAGAAA CAGCGCATTC CTTCAAACAA GAAAGAACCT
GCTTTTAATA TAGAATTCGA CGGTATAATT ATCAGTGAAG GTGTATTGGA AATGATGCCT
GATGGTTATG GTTTCCTCCG CTCTTCTGAT TATAACTACC TCAGTTCACC AGATGATATT
TATGTTTCTC CTTCACAGAT CAAATTGTTC GGACTGAAAA CCGGCGATAC CGTGAAAGGT
TCCGTGCGTC CTCCGAAGGA AGGTGAGAAA TATTTCGCAC TGCTGAAAGT AGAAACAATT
AATGGTAAGT CTCCTGAAGA AGTACGTGAC CGCGTACCTT TCGATTATCT GACACCATTA
TTCCCATTCG AAAAATTACG TCTTACTACT ACTTCCAATA ACTACTCTAC CCGTATCATG
GACCTCTTTA CCCCAATCGG TAAAGGTCAG CGTGGATTGA TCGTAGCACA GCCAAAGGTT
GGTAAAACCA TGTTGCTGAA AGAAGTAGCT AATGCAATCG CGACAAACCA TCCTGAAGTA
TACCTGATGG TCGTACTGAT CGATGAACGT CCGGAAGAGG TAACTGATAT GGAACGTAGC
GTGAAAGCGG AAGTCATTGC GTCTACTTTT GACGAACCAG CTGAGAAACA CGTAAAAGTA
TCTGCTATCG CTTTACAAAA AGCAAAACGC CTGGTAGAAT GTGGTCATGA CGTAGTAATC
CTCCTGGATT CCATTACCCG TCTGGCACGT GCGCACAACA CAGTTGCTCC TGCTTCTGGT
AAAGTATTGA GTGGTGGTGT GGAAGCAAAC GCTATGCAGA AACCAAAACA ATTCTTTGGT
GCTGCCCGTA AGATTGAGAA TGGCGGTTCA CTGACCATCC TTGCTACTGC ATTGATCGAT
ACAGGTTCTA AAATGGACGA GGTAATCTTT GAAGAATTCA AAGGTACCGG TAACATGGAA
TTACAACTTG ACCGTAAACT GGCCAACAGA CGTATCTTCC CTGCGATCGA CGTATCTGCA
TCTTCTACCC GCCGTGATGA CCTGCTGCTG GAAAAAGATA TCCTGAAACG TATACACATT
CTGCGTAATC ACCTTGCAGA TATGAATACA GAGGAATCCA TGCACTTTAT GCTGCAACAC
ATGAGGGGAA CCAAGAACAA CGAAGAGTTC CTGATCTCCA TGAATGGATA A
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| Protein sequence | MMYDILQLND MLVPELLDIA EKLDVPNAKK LSKQDLIYKI LDKQAVMASE GNPANGEEKK
TRKRKTKKEE EAEEAPVAET TAADEKPKRG RKPAANGLKS KETEFEEPKA QDTKPKKKNF
DIDLDIPSLT FDDDDDVIIP QFTEDIEEEE EEEDVITTLP NAQEAEEEEE EDDEDEDDFV
MPEEPVLAQK QRIPSNKKEP AFNIEFDGII ISEGVLEMMP DGYGFLRSSD YNYLSSPDDI
YVSPSQIKLF GLKTGDTVKG SVRPPKEGEK YFALLKVETI NGKSPEEVRD RVPFDYLTPL
FPFEKLRLTT TSNNYSTRIM DLFTPIGKGQ RGLIVAQPKV GKTMLLKEVA NAIATNHPEV
YLMVVLIDER PEEVTDMERS VKAEVIASTF DEPAEKHVKV SAIALQKAKR LVECGHDVVI
LLDSITRLAR AHNTVAPASG KVLSGGVEAN AMQKPKQFFG AARKIENGGS LTILATALID
TGSKMDEVIF EEFKGTGNME LQLDRKLANR RIFPAIDVSA SSTRRDDLLL EKDILKRIHI
LRNHLADMNT EESMHFMLQH MRGTKNNEEF LISMNG
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