| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0860 |
|---|
| Symbol | |
|---|
| ID | 8356974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 1031211 |
|---|
| End bp | 1031963 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644963014 |
|---|
| Product | Rhomboid family protein |
|---|
| Protein accession | YP_003120559 |
|---|
| Protein GI | 256419906 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGTACG TTGAGGAAAG ATCCGAAACT CCATTATCCC TTGGAGAAGA AAAGAATATG
GTCACACAGC TGTTGCTCGT CAACATCACC ATATTCATGC TGTTGTTTTT TACAGAAATC
GTCTATGGTA TTGAAGGTAA TCCTCCCGCA CGGTTTAAAG TAGATGTACT TTCTCATGTA
CTGCTACCAT CTACTATCGA CGGACTGCTG AAAAATCCAT GGACCCTGTT CACAACAATG
TTCACACACG ACAGTTTCTG GATGATTACC AGTAACATGA TCTGGCTGGC CTGCTTCGGC
ACCATGTTAC AGAATCATGC AGGTCGCCAG CGCATCCTGC CGCTATACCT GCTGAGTGGC
CTGGTCGGCG CAGTATGCTA TCTCCTGGGT ATGCAGTTCA TCCCGGCTTT CCATGCATTA
CAACCTGCCG CAACCATGAC AGGCGCTTCC GCTTCTATCA TGGCGCTTGC AATCGGTGCA
ACCGTAGTGG CTCCCAACTA CAGATTGCTG CCTAATCTGC CCATTCCGTT CTGGATCATT
ACCCTGATCT TCCTGATCGT AAATATTGGT AGCCATGTGA TGAACAACCA GGGCATCACT
AACTTGCCGG CACTGATCGG CGGCGGACTG ACTGGCTTCC TCTATATGCA GCAATGGAAG
AAAGGAAATG ACCTCGGACT CGGATTCAAT AAATTTATCT TTAAGATCAC TCACCTGTTT
CATCCAAAGT CTCACCTGCA CGTGGTGAAA TAA
|
|---|
| Protein sequence | MMYVEERSET PLSLGEEKNM VTQLLLVNIT IFMLLFFTEI VYGIEGNPPA RFKVDVLSHV
LLPSTIDGLL KNPWTLFTTM FTHDSFWMIT SNMIWLACFG TMLQNHAGRQ RILPLYLLSG
LVGAVCYLLG MQFIPAFHAL QPAATMTGAS ASIMALAIGA TVVAPNYRLL PNLPIPFWII
TLIFLIVNIG SHVMNNQGIT NLPALIGGGL TGFLYMQQWK KGNDLGLGFN KFIFKITHLF
HPKSHLHVVK
|
|---|
| |