| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0852 |
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| Symbol | |
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| ID | 8356966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 1021111 |
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| End bp | 1022604 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644963006 |
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| Product | RNA polymerase, sigma 54 subunit, RpoN |
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| Protein accession | YP_003120551 |
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| Protein GI | 256419898 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAAGC AGACACAACA GCAGAAGCTA TTACAGAAAT TGTCGCCGCA GCAGATTCAG
CTGATGAAAC TGCTCCAGGT ACCTACGGCT GTTCTTGAAG AGCGTATCAA GGAAGAGCTG
GAGGAAAACC CTGCCCTGGA ATACGGGGAA GACGCGCATG AAGACGAGTA TAAAGACCCG
CAGGAAGAGT ATAATAATAA CGAGGAAGGC GATGACGACG AGTTTGAACC TGATGGGAGT
GAAAACGAAT ACGATAATAT TGACATTTCC GAATATGTAA GTGAAGGAGA TGATGACATC
GCTGACTATA AACTCAGGGA TGACAACTAT CCTGACCAGG ATGAAAATAA AACTATCCCG
GTAAGGGTGG AAACCTCTTT TCATGAACAC CTGCTTGAGC AGTTAGGTAT GCTCGAACTG
GATGAACGGC AGAACGCTAT CGCAGAACAG ATCATTGGTA GTATCGACGA CGACGGTTAT
CTGCGTCGTG AAGTGAGCGC TATCGTGGAT GACCTTTCTT TTTCCCAGAA TGTCGCTACC
GATGAAGAAG AAATAAGAGA ACTGATCCGG ATGATACAGG AGTTTGATCC GCCGGGAATC
TGTGCTACTG ATCTGAAGGA ATGCCTGTTA TTACAACTGA GACGTAAGCC ACAGGATGAT
TTCGGAGTAG TAGGCGCTTA TCTGATCCTG GAGAATTATT TCGATGAGTT CACTAAAAAG
CACTACGAAA AGATTCAGAA GGGGTTGAAT ATGAGTGATG ATGCGTTGAA AGAGGCGATC
GGACAGATCA TCAAACTGAC CCCTAAACCA GGCGGCAATT TTGCGACCCT GAATAAGGCG
GAAAGTTATG TGGTGCCTGA CTTCTTTATC CTGAACAATA ACGGTAAACT GGAGCTGACG
CTGAACTCCA AGAATGCGCC TGACCTGCGT ATTTCAGAAG GGTACAGGGA TATGCTGAAG
GAATATGACC GTGGGGATAA AAAAGACAAA CGTCAGAAAG AAGCGGTGTT ATTCATCAAA
CAAAAGATCG ATGCCGCAAA ATGGTTCATT GATGCCATTA AACAGCGTCA ACATACCCTT
TTGTCTACCA TGGAATCCAT TATGGGGTAT CAGCGCGAAT TCTTCCTTAC GGGAGATGAA
ACGACGATGC GTCCGATGAT CCTGAAAGAT ATTGCCGATA TCACCCAGCT GGATATCTCT
ACTGTAAGCC GTGTGGCCAA TAGTAAGTAT GTACAGACGG AGTTCGGTAC CTTTAAGCTG
AAATTCTTTT TCAGCGAATC ATTATCCACT GATAGTGGGG AAGAGGTATC TACCCGCGAG
GTAAAAAAGA TACTGTCTGA CCTGATTGAA GGAGAAAATA AGCGTAAACC ATTAAGCGAC
GAAAACCTGA CCAAGATGTT GCAGGACAAA GGGTATAATA TTGCCCGCCG TACTGTGGCA
AAATACCGCG AACAGTTAAA TATTCCGGTA GCAAGGTTAA GGAAGGAGTT GTAA
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| Protein sequence | MLKQTQQQKL LQKLSPQQIQ LMKLLQVPTA VLEERIKEEL EENPALEYGE DAHEDEYKDP
QEEYNNNEEG DDDEFEPDGS ENEYDNIDIS EYVSEGDDDI ADYKLRDDNY PDQDENKTIP
VRVETSFHEH LLEQLGMLEL DERQNAIAEQ IIGSIDDDGY LRREVSAIVD DLSFSQNVAT
DEEEIRELIR MIQEFDPPGI CATDLKECLL LQLRRKPQDD FGVVGAYLIL ENYFDEFTKK
HYEKIQKGLN MSDDALKEAI GQIIKLTPKP GGNFATLNKA ESYVVPDFFI LNNNGKLELT
LNSKNAPDLR ISEGYRDMLK EYDRGDKKDK RQKEAVLFIK QKIDAAKWFI DAIKQRQHTL
LSTMESIMGY QREFFLTGDE TTMRPMILKD IADITQLDIS TVSRVANSKY VQTEFGTFKL
KFFFSESLST DSGEEVSTRE VKKILSDLIE GENKRKPLSD ENLTKMLQDK GYNIARRTVA
KYREQLNIPV ARLRKEL
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