| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0812 |
|---|
| Symbol | |
|---|
| ID | 8356925 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 974524 |
|---|
| End bp | 975861 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644962965 |
|---|
| Product | oxidoreductase domain protein |
|---|
| Protein accession | YP_003120511 |
|---|
| Protein GI | 256419858 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000177397 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAGG AAGAACTGAA TCAATTCCAC GGAAAGTCCC GCAGGGACTT TGTAAAAGAG
TCTTCATTAC TGGCTGGCGG TTTACTGACC ATGCCGATGC TGTCTCAGGC CAATTTCTTT
TCAGGAGCAG ACAATGTTAT TAAAATAGCG CTGATCGGAT GCGGTGGGCG TGGTACCGGC
GCCGCTGTAC AGGCGTTGAG TACTAAACAG AACGTTCAGC TGGTAGCAAT GGCCGATGCT
TTTGCTGAGC GACTGAATAA CAGCTACAAT GACATTAAAG GAGAAGTAGG CGATACGCCA
GGAAAACTGA ATGTAAAAGA GGAGAACAAG TTTATCGGTT TTGATGCCTA TAAGAAAGCG
ATCGCACTGG CAGATGTAGT TATCCTTGCT ACACCTCCGG GTTTCCGTCC GATCCATTTT
GAAGAGGCGG TAAAACAGGG TAAGCACATT TTCATGGAAA AACCTGTAGC GACCGATCCT
GCTGGTATTA AAAGAGTGCT GGAAGCTGCC GAAGTAGCAA AAAGCAAGAA ACTGAATGTT
GTAGTGGGCT TACAACGCCG TTACCAGACC TCTTATCGTG AATTGTACAA ACGTTTCCAG
GATGGTATCA TCGGTGATAT TTTGTCTATG CAGGTATGGT GGAATCAGGG TGCTTTATGG
GTAAGACCCC GCAAACCTGA GTATACCGAA ATGGAGTACC AGATGCGTAA CTGGTATTAC
TTCAACTGGT TATGTGGTGA TCATATCGTA GAACAGCATA TTCACAATAT TGACGTCGGT
AACTGGTTCA TGAACGATTA TCCGGTAACT GCCGTAGGTA TGGGCGGACG CTCTGTACGT
ACCGGTAAAG AATTCGGAGA GATCTATGAT CACCATTACG TAGAATACCG TTATGGTAAT
GGCGTGGTGA TGAACAGCCA ATGCCGTCAC TGGAAAGATG CAGACAGCCG GGTAGATGAG
GAAATCGTCG GTACAAAAGG GCGTATGCTG ATGGATAAAG CCGTGATCAA AGATCATAAA
GGCAAAGTGC TGTACCAGTT TGATAAGAAG CAGGAAAATC AGCCTTATCA GGCAGAACAT
GATGAGCTGT TTGCTGCTAT CGCAAAAGGG GAGTATAAAT TCCATGACGC AGAAAGAGCG
GCTAAAACAA CCCTTACGGC TATTATCGGG CGACTGGCCA CTTATTCCGG ACAGACCATC
GCTTTTGATA AAGCACTGAA TTCAGGGCTG AATCTGCAAC CTGCTACCTA TGCGTTTGAT
GCTGCGCCAC CGATCGTACC AGATGCAGAT GGCAATTACG CTTATGCACA TCCAGGTATC
ACTAGATATT TCAGCTGA
|
|---|
| Protein sequence | MQQEELNQFH GKSRRDFVKE SSLLAGGLLT MPMLSQANFF SGADNVIKIA LIGCGGRGTG
AAVQALSTKQ NVQLVAMADA FAERLNNSYN DIKGEVGDTP GKLNVKEENK FIGFDAYKKA
IALADVVILA TPPGFRPIHF EEAVKQGKHI FMEKPVATDP AGIKRVLEAA EVAKSKKLNV
VVGLQRRYQT SYRELYKRFQ DGIIGDILSM QVWWNQGALW VRPRKPEYTE MEYQMRNWYY
FNWLCGDHIV EQHIHNIDVG NWFMNDYPVT AVGMGGRSVR TGKEFGEIYD HHYVEYRYGN
GVVMNSQCRH WKDADSRVDE EIVGTKGRML MDKAVIKDHK GKVLYQFDKK QENQPYQAEH
DELFAAIAKG EYKFHDAERA AKTTLTAIIG RLATYSGQTI AFDKALNSGL NLQPATYAFD
AAPPIVPDAD GNYAYAHPGI TRYFS
|
|---|
| |