| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0783 |
|---|
| Symbol | |
|---|
| ID | 8356896 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 949188 |
|---|
| End bp | 950993 |
|---|
| Gene Length | 1806 bp |
|---|
| Protein Length | 601 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644962936 |
|---|
| Product | phage shock protein C, PspC |
|---|
| Protein accession | YP_003120482 |
|---|
| Protein GI | 256419829 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1983] Putative stress-responsive transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.626732 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA TCATTAACAT AAACCTGGCC GGCCGCCTTA TCGCTATCGA GGATAGTGCA
TATGAGATAT TGCGGCAGTA CCTGGAAAGC TTATCGCGCT ATTTCGCTCG CGAAGAGGGT
GGGGATGAGA TTGTGAGTGA TATTGAGAGC CGCATTGCAG AGCTTTTCCT AAATAAATTA
AAAACAACAC ACTGTATCAC GGACGAAGAC GTACAGGCCG TAAAAGCCTC TATGGGTACG
CCGGAACAGT TTGATCAGGT GGAAGAAGGT AGCGGCAAGC AACAGCAGCC AGCCAACGAC
CCTGCATATG AATCAATCCG CCCGCGTAAA AGGCTGTACC GTGATCCGGA CGCAAAAGTA
CTGGGTGGTG TATGTGGTGG CCTTGGTGCT TACCTGAACG TAGACCCGGT AGTATTCCGT
ATCATCTTTG CCCTGCTGGC AATTGGTGGT TTCGGTTCCG GTATCCTGGT ATATTTCATC
CTGTGGATTG TAACCCCTGA GGCAAACACT GCCGCTGAAA AATTGCAGAT GAGAGGAGAA
AAGGTAGACG TTAATAATAT ACGTGCTACC GTGCAGGACG AGATCAACGC TGCCAAAAGC
CATTTCAAGA ACTTTGGGAA CGATGTTAAA AATTTTTCCC AGGGCCGCGG AAGGCAAGTT
GGTAGCGACA TCGAAAGAGC TTTTCGCAGC ATCTTCGAAG CGTTGGGAAA AGTACTCCTG
TTACTGACCA AGGGATTCTT CTATTTTCTT GCGGTTGTGA TCCTTATCTC GCTGATCAGC
GTAGGAATTG GCATCACCGC ATCTTCCGCG GCCCTTTACC CTCTGAAAAA CCTGATCCTG
GCAGGTACTG TTCAAAATCT GTTACTCTGG TGCTCCATCC TGTTCCTGGT AGGTATCCCT
ATCGTGGCGC TGATCATGTT CTTCGTCCGC AAGGCGACCG GGATCAAGGA AGCTAACCGT
TATGTCGGAT ATACACTGAG CCTGTTATGG TTTGCCGGTC TGATCTGTGC AGTTGCACTG
GTCGCCTCTG TGATCAGAGA CTTCAGGACC GGTCCTGGCA GAATTTTAAA AGAAAATTAC
GCCCTCGTGC AACCTTCCAA TGGAAAGTTA GTCATTAAAC AGGCGGAGGA TTATACCAAC
ATCGACGATA TCGACTTTTT CGGAGATGCA CTGCGTGTGA CAGAAGACAC CGTTATCATC
AATTCTGCCA GGATCAGACT GGAAAAAAGT GATAGCGACA GTTTCGAGGT GTATATAGAA
CGCTATTCCC GCGGACGTAC CGTTGCCCAG GCCAGAGCCC TCGCAAAACA AATTCAGTAT
CAGCTGGAAC AGAAAGATTC AATTCTCTAT GTACCATCAG GTATCTCAAT TCCGGCGAAT
TCTAAATTCA GAGGACAGCA TATCAGGGTG ATCGTGAAAG TACCTGCCAA CAAGAAGGTA
CAGATGGACA GAAACCTGGA ATACTCTCAC GGATGGGATT TCAATGACGA TTGGGACGAT
TTTGGCCGTA ACCGCGACAG AGGTCACGTT GAAATCAAAA TGAATGAAGA CGGATCTTCT
GTAGATATGG ACCATAACAA TGACTCCAAT CGTGAGGATA ATGACGATGA CGATCAAAAC
GGGGACAACA GAGAGAATAA GGCTGATTCC CTGGAAAGAA ACTACCGCTA TAAAGGCGGA
AAACAGGAAA ATAAGACGCC TGTAGACAAT AGTGGCTCCG GCAGCACACC CGCTGCAAAG
ACAAGCGAAG CAGCCCTGGA TGTAGTGAGC ACTATCGGAT ACAGTTTATA TAAACTCGTT
AAGTGA
|
|---|
| Protein sequence | MKKIININLA GRLIAIEDSA YEILRQYLES LSRYFAREEG GDEIVSDIES RIAELFLNKL
KTTHCITDED VQAVKASMGT PEQFDQVEEG SGKQQQPAND PAYESIRPRK RLYRDPDAKV
LGGVCGGLGA YLNVDPVVFR IIFALLAIGG FGSGILVYFI LWIVTPEANT AAEKLQMRGE
KVDVNNIRAT VQDEINAAKS HFKNFGNDVK NFSQGRGRQV GSDIERAFRS IFEALGKVLL
LLTKGFFYFL AVVILISLIS VGIGITASSA ALYPLKNLIL AGTVQNLLLW CSILFLVGIP
IVALIMFFVR KATGIKEANR YVGYTLSLLW FAGLICAVAL VASVIRDFRT GPGRILKENY
ALVQPSNGKL VIKQAEDYTN IDDIDFFGDA LRVTEDTVII NSARIRLEKS DSDSFEVYIE
RYSRGRTVAQ ARALAKQIQY QLEQKDSILY VPSGISIPAN SKFRGQHIRV IVKVPANKKV
QMDRNLEYSH GWDFNDDWDD FGRNRDRGHV EIKMNEDGSS VDMDHNNDSN REDNDDDDQN
GDNRENKADS LERNYRYKGG KQENKTPVDN SGSGSTPAAK TSEAALDVVS TIGYSLYKLV
K
|
|---|
| |