| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0677 |
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| Symbol | |
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| ID | 8356789 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 817493 |
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| End bp | 818077 |
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| Gene Length | 585 bp |
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| Protein Length | 194 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644962829 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_003120376 |
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| Protein GI | 256419723 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0674596 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTTTTA AATATTATAT AATATATAAG CCTTTCCAGG TACTTACGCG TTTCGGGAAA
GAAGAGGGAA AGGCCAGTCT GGCGGACTAT TTCGACGTAC CGTCGGACGT ATATCCGGTG
GGCAGATTGG ACTATGACAG CGAGGGATTA CTGATCCTCA CGAACGATAA ATCCTTAAAT
CACCGTTTAC TGGACCCCAA ATTTTCGCAC GAGCGGGAGT ATTGGGTGCA GGTGGATGGT
GCGGTAAATG CGGAGGCGAT ACAACAGCTG AAGCAGGGCG TTAAGATCGC TATAGATGGG
AAGCCCTATC AAACCCGCCG TTGTCAGGCG GCTATCTTTG AGGAGGAACC ACCGGTACCG
GAGCGGAATC CCCCTATCCG TTTCCGTAAG CTGATTCCGG CGCCCTGGAT CAGATTGACC
CTTGGAGAGG GAAAAAACCG GCAGGTCAGA AAAATGACTG CTGCGGTGGG TTTCCCGACG
TTGAGACTTA TACGTTACCG CATAGCCCGT ATTACGGTGG AGGGCTTAGA ACCGGGCCAG
ATGCGGGAAA TGGACCGGAA AGAGATCTTC GATCTGCTGT TTTAG
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| Protein sequence | MPFKYYIIYK PFQVLTRFGK EEGKASLADY FDVPSDVYPV GRLDYDSEGL LILTNDKSLN
HRLLDPKFSH EREYWVQVDG AVNAEAIQQL KQGVKIAIDG KPYQTRRCQA AIFEEEPPVP
ERNPPIRFRK LIPAPWIRLT LGEGKNRQVR KMTAAVGFPT LRLIRYRIAR ITVEGLEPGQ
MREMDRKEIF DLLF
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