| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0566 |
|---|
| Symbol | |
|---|
| ID | 8356672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 690454 |
|---|
| End bp | 693408 |
|---|
| Gene Length | 2955 bp |
|---|
| Protein Length | 984 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644962712 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003120265 |
|---|
| Protein GI | 256419612 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0829893 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAATC TTCTATTTCG CAAGGTGCGT CTGTTATGCT CGTTATTACT GCTCATTGCA
GGTATAGCCA GCGCACAGAC CAAACCCGTG ACCGGTAAGA TCACGGATGA AAATGGCAGC
GCTGTTCCGG GCGCCACTGT GCAGGTAAAA GGTACCAGCA CAGGTACGGC TACCGGAGCG
GACGGTACAT TTAAGTTAAA TGTACCTGCC ACTGCTACTA CACTGGTCGT TTCCTTTGTC
GGTTATGTAC AGCAGGAGGT TCCGCTGGCC GGCAAATCAG AATTTTCCAT TGCATTGGTA
CCCACCAGTA CTACCCTCAC TGACGTGGTA GTAGTAGGTT ATGGTACTAC CCGTAAAAAA
GACCTCACGG GTTCGGTAGT CTCTATTAAG TCCGCCGACT TTAACCGTGG TATCGTTACT
GCACCTGATC AGCTGATCCA GGGTAAAGTA GCCGGTCTCA TGGTAATCGC CAACAGTGGT
GCGCCAGGTG GTGCTACTAC TGTAAGGATC CGAGGTAACT CTTCCGTAAG GACGGGCAAC
CAGCCATTGT ACGTAATAGA TGGTATGCCG CTTGACGGCC GTACCGCTAA GCCTTCTGTT
AGCGCCAACG GTCTTGGTCA GACCCCGGAT GCTAACCCGC TTAACTTCAT CAACTCCTTT
GACATTCAGT CAATGGATGT ACTGAAAGAT GCGTCGGCAA CCGCCATCTA CGGTGCGAGA
GGTGCTAACG GTGTGGTAAT TATCACTACT AAGAAAGGCG CTGTCGGTGC TCCTCGTCTG
GATGTCAGCT ATTCTGCCGG TATGAGTAAG ATCCTGAAGA AACTGGATGT ACTGAATGCG
GACGAGTACA GAAGTGCCCT GAAGCAATAT AGTCTTACCG GCGGTGATAA TGGCTCCAGC
GTTAACGCGA TGGAGAGCAT CCTGCGCACC GGTACCACGC ACAACGTCAA TGTAGGCGTT
AGCGGCGGTA ATGAAAATGG CGTTTACAGA GCGTCTTTCG GTATGCTGGA TCAGCAGGGT
ATCGTAAAGA AAACCGGTCT GAAGAAATAC ACTGCCAACC TGAACGGTCA GTATAAATTG
ATGGAAAATA AAAGACTGGG ACTGGATTAC TCTATCCAGG CAGCACATAC TACCGAACAG
ATCGCACCTA TTACCAATAA CGCTGGTTTT ACGGGTAGTC TGGTCGGTCA GGCACTCCAG
TGGAATCCAA CATTGGCACT GCGTAAGGCG GATGGCTCAT TTAATATCCT GGGTGAAGGT
TCTGCCATCA ACCCGGAAGC AATGTCAGCT GCTTATGATG ATAAAGTGAA TATCAACAGT
ATCGTAGCCA GCATTTCTCC TTCTTACAAG ATCACTGACA ACCTGGAATA CCGTTTTACT
TATAGTATCA ATCATCAGGT AGGAGAAAGA GAAACCCAGA TAGCCTCCTT TATCAACATC
GCTCAGGTAA TGAATAACGG ACAGGCTTAT TATGGTACCA CTACCCTGAC ATCTCAGCTG
ATGACACATA CCCTGAACTA TAGCAAACAG CTCACACCAG CATTATTCCT GGGTGCTGTG
ATCGGGTATG AGCGCCAGGA TTTTGACTAT AAAGGCAGAA ATCTGGGGGG ACTTGGTTTC
ACCACAGATG TGCTGAAATA TACTGACATC CTCCAGAACC CTTCCCAAAC GAATACTTTT
ATCAACTCCT TCCGCAATCC TGAATCAAAA CTCCAGTCCT ATTTCGGTAG GGCTAACCTG
AATTTCCTGG ACAAATACCT GTTGACAGCA ACCCTGAGAG CAGATGGTTC CAGTAAGTTT
GGTTCCAATA ACAGATATGG TTACTTCCCG TCTTTCGCTG CAAAATGGAA TATCAGTAAT
GAGGCTTTCC TGAAAGACAA TAAAACCATT AACCAGTTAG CACTGCGTGT AGGCTGGGGT
ATCACCGGTA ACCAGGAGTT CCCTGCAGGT GCTGCACAGG AACAGTATAC ACTTAACTCA
AATGGCGGCG CCAGTCTGAG CAATGTAGCT AACCCTAACC TGAAATGGGA AAGCTCTAAA
CAGCTGAACG CCGGTATCGA TTATACCTTC TTTGGCGGCA GATTATATGG TAGTGTAGAC
TACTTCCATA AAAATACCTC CGACCTGCTG TTCAACTTCC CGGCTATCCA GCCTGCACCT
GCATCCAACT ACTGGATCAA TCTGCCAGCT AACGTGATCA ACAAGGGTAT TGAAGTGGTA
TTACGCGGAG ACGTCGTTTC TACCAAGGAT TTCAACTGGA ATCTCGGTGT GAACGCTACA
TTCCTGAAGA ACAGACTGGA AAATTATGAT GGTCCGCCGG TATTAACAGG TTCGATTAGT
GGTCAGGGGG TATCTGATGC GTATGCACAG CGTCTGGCAA ACAACGAACC ACTTAACACA
TTCTATCTGA GAAGATTCGA AGGATTTGAT GCCAATGGTC AGGGTCAGTA TACAGATGGA
GGTAACACCC TGTTCTTCAA GGGAGATCCG AACCCTAAAA CCATGTTGGG TATCATCACT
GCTGTGAATT ATAAAAAATG GGCATTGAAT GTGAGCGCGC ATGGTGCTTA CGGATTTGAT
GTCTATAATA ACACTGCTAA CACTGTATTA CCGCTGAATA ACCTGGGTTC CAGGAACGTG
GCTAAAGATG TGATAGGGAC CAAAGAAAAT CTCTCCAATC CGATTACAGT ATCCAGCCGC
TATCTGGAAA AGGGCAATTT CATGAAATTG GATAATGCCA CCATCAGTTA TAGTATCGGG
AACATAGGTA AGGTGATCAA GAATGCATCC ATTTACATCA CCGGACAAAA TCTCTTCATC
ATCACGAAGT ATTCAGGATT TGACCCGGAA GTGAATACGG ATAAAAGTAT CAATGGCGTA
ACCTCCTTTG GTATTGAGTA TTCCCCTTAT CCTACCGCCA GGAACTTTCT GGCAGGCATC
AATTTCTCGT TATAA
|
|---|
| Protein sequence | MTNLLFRKVR LLCSLLLLIA GIASAQTKPV TGKITDENGS AVPGATVQVK GTSTGTATGA
DGTFKLNVPA TATTLVVSFV GYVQQEVPLA GKSEFSIALV PTSTTLTDVV VVGYGTTRKK
DLTGSVVSIK SADFNRGIVT APDQLIQGKV AGLMVIANSG APGGATTVRI RGNSSVRTGN
QPLYVIDGMP LDGRTAKPSV SANGLGQTPD ANPLNFINSF DIQSMDVLKD ASATAIYGAR
GANGVVIITT KKGAVGAPRL DVSYSAGMSK ILKKLDVLNA DEYRSALKQY SLTGGDNGSS
VNAMESILRT GTTHNVNVGV SGGNENGVYR ASFGMLDQQG IVKKTGLKKY TANLNGQYKL
MENKRLGLDY SIQAAHTTEQ IAPITNNAGF TGSLVGQALQ WNPTLALRKA DGSFNILGEG
SAINPEAMSA AYDDKVNINS IVASISPSYK ITDNLEYRFT YSINHQVGER ETQIASFINI
AQVMNNGQAY YGTTTLTSQL MTHTLNYSKQ LTPALFLGAV IGYERQDFDY KGRNLGGLGF
TTDVLKYTDI LQNPSQTNTF INSFRNPESK LQSYFGRANL NFLDKYLLTA TLRADGSSKF
GSNNRYGYFP SFAAKWNISN EAFLKDNKTI NQLALRVGWG ITGNQEFPAG AAQEQYTLNS
NGGASLSNVA NPNLKWESSK QLNAGIDYTF FGGRLYGSVD YFHKNTSDLL FNFPAIQPAP
ASNYWINLPA NVINKGIEVV LRGDVVSTKD FNWNLGVNAT FLKNRLENYD GPPVLTGSIS
GQGVSDAYAQ RLANNEPLNT FYLRRFEGFD ANGQGQYTDG GNTLFFKGDP NPKTMLGIIT
AVNYKKWALN VSAHGAYGFD VYNNTANTVL PLNNLGSRNV AKDVIGTKEN LSNPITVSSR
YLEKGNFMKL DNATISYSIG NIGKVIKNAS IYITGQNLFI ITKYSGFDPE VNTDKSINGV
TSFGIEYSPY PTARNFLAGI NFSL
|
|---|
| |