| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0541 |
|---|
| Symbol | |
|---|
| ID | 8356647 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 642895 |
|---|
| End bp | 644283 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644962687 |
|---|
| Product | ammonium transporter |
|---|
| Protein accession | YP_003120240 |
|---|
| Protein GI | 256419587 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0004] Ammonia permease |
|---|
| TIGRFAM ID | [TIGR00836] ammonium transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA CATCATTTCA AGACTATTTG CCCTTCATTG TGCTGGCATT GGTCGCGATA
GTTGCACTTT TCGTCCCAGG TGAGCTGCCT TTTGCTGATC CTGAAGGAAA ATACAATTAT
GGTGATATTG CCTGGATCCT GGTGGCATCC TGCCTCGTAT TCCTGATGAC TCCCGGATTG
TCATTCTTCT ACGGTGGTAT GGTGAATCGT AAGAATGTGA TCTCAACATT GGTACAGAGC
TTTATTGCTA CCGGTGTGGT GAGCATAGTA TGGGTTGCCG TTGGATTCAG CCTTTCCTTC
GGTACATCAA TAAATGGTCT GATTGGTGAT CCTTCAACCT TCCTGTTCTT TAAAGGAGTG
CCTTCCGGCC AGCCTTGGTC TCTGGGAACG ACTATTCCTT TATTGTTATT CGCCCTGTTC
CAGATGAAAT TCGCGGTAAT CACTCCTGCG CTGGTAGTAG GTGCTGTTGC AGAAAGGATC
CGCTTCACAT CTTACGTATT ATTCATGGTG TTATTCAGTC TGCTGGTATA TGCGCCGATC
GCGCACTGGA CCTGGCATCC TGATGGTATC CTGTTCAAAC TCGGTGTACT TGACTTTGCA
GGTGGTACAG TAGTACACAT CTCTGCTGGT TGCGCTGCCC TGGCAGGTGT ACTGGTACTG
AAACGCCGTA AAGATCATAT TGAAAAGAAA GAACTGCAAC CTGCAAACAT TCCTTTCGTA
CTGTTAGGTA CAGGTCTGCT GTGGTTCGGC TGGTTCGGTT TCAACGCAGG TTCTGCCCTG
GGTGCTAACG GCCTCGCTGC TTCCGCTTTC GCTACTACAA ATACTGCCGC TGCTGCTGCT
GGTCTTTCCT GGATCTTCTT CGATGTGATC CGTGGTCGTA AAGCTTCTGC GCTCGGTTTC
TGTATCGGTG CTGTAGTTGG TCTTGTAGCT ATCACCCCTG CTGCTGGTTT CGTAGGAATT
CCACAGAGTA TTATGATAGG TTTCGCTTCC GCTATCGTAT CTAATCTGGT AGCACACTAC
AAATCCAAAA CTGCGATCGA TGATACCCTC GACGTATTCC CTTGCCATGG CGTAGGCGGT
ATGGTAGGTA TGCTGCTGAC AGGTATTTTC GCCAGCAAAA ATGTAAACGG TGCTATCTCT
GACGGTCTGT TCTACGGTGG TTTTGAACTC TTCAAAAACC AGGTAATCGG CCTCGTGATC
GTAGTAGTAT ACAGCTTCTC TGTGTCTTAT GGCATCTTCA AGCTGATCAA CCTGATCCAC
CCACTCCGTG TAAGCGAAGA AGAAGAAGAA CTGGGTCTGG ATGCTACACA GCACAACGAA
CAGTACCATC CTGCAATGCT GAGTGTACAA GACAACGGTG CACTGAAAGA AGAGCAGATG
GCGCACTAA
|
|---|
| Protein sequence | MKKTSFQDYL PFIVLALVAI VALFVPGELP FADPEGKYNY GDIAWILVAS CLVFLMTPGL
SFFYGGMVNR KNVISTLVQS FIATGVVSIV WVAVGFSLSF GTSINGLIGD PSTFLFFKGV
PSGQPWSLGT TIPLLLFALF QMKFAVITPA LVVGAVAERI RFTSYVLFMV LFSLLVYAPI
AHWTWHPDGI LFKLGVLDFA GGTVVHISAG CAALAGVLVL KRRKDHIEKK ELQPANIPFV
LLGTGLLWFG WFGFNAGSAL GANGLAASAF ATTNTAAAAA GLSWIFFDVI RGRKASALGF
CIGAVVGLVA ITPAAGFVGI PQSIMIGFAS AIVSNLVAHY KSKTAIDDTL DVFPCHGVGG
MVGMLLTGIF ASKNVNGAIS DGLFYGGFEL FKNQVIGLVI VVVYSFSVSY GIFKLINLIH
PLRVSEEEEE LGLDATQHNE QYHPAMLSVQ DNGALKEEQM AH
|
|---|
| |