| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0448 |
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| Symbol | |
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| ID | 8356554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 532434 |
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| End bp | 533477 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644962594 |
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| Product | PDZ/DHR/GLGF domain protein |
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| Protein accession | YP_003120147 |
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| Protein GI | 256419494 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGC TATTGCAGAC CCTTACACTG GCAAGCATTA CCTGCTTTGC TTTCAGCTCT
GCTACTATCG CGCAGGATAA AAGCAGCGAT AAACTGGGAG AGTATGACGA GATCGTTATT
AAACGAAACA CCAATAAGGA TGGGAAAGTG ACCATCGAAA TAAAGGATGG TAATGTTTTA
GTTGACGGTG ATAAAATGGA CGCTTATAAA GACGGTGACA TTTCTGTATA CAGACGTCGC
ATCCGTCCTG TAGATGGCAA TACTTTCAAT TTTGCCATGC CTCCGGGTGG AGGCGGCATT
CAGCTGTTTA ATGAAGATGA CGAGGCTGGC GATGACGCAA TGGCTATCAA ACCGGGCAAA
GCCGTACTGG GCGTATTTAC CGAAAAGAAA GAAGCGGTTG GTGTAACTGT AAAAGAAGTG
GCAAAAGGTA CACCTGCGGA GAAAGCCGGT TTACTGGCTG GCGATATAAT CACTAAAGTA
GACGCTGATA AAGTCGACGA ACCAAAAGAC CTGTTTGAGA AGATCGGCGC CCATGATCCT
GGTGATAAAG TAACTATCAC TTACTTACGT GATAAAAAAG AAAATACAGC GACCGTTACC
CTGGATGAAA GAAAAGGCGA AGGTACCCTG GAGCTTTTCC CTCGCAATGA CAGAAACTTC
CGTCGTATAC CCCGTGGCAG CTTTAACTTC GGAGATGGCG GGCCTGGGCA GGGTTTTCCT
GGTCCGGGTT TCAACCGTGA TTTCCGTAAT TTCCATGAAA ACAATGAAGT AAAACTGGGT
CTTTCCGTAC AGGATACGGA AGATGGTAAA GGTGCAGTAG TGTTAAGCGT AGCTCCTGGT
TCCGCTGCTG AAAAAGCCGG TTTCAAAGCC AATGATATCG TTACTGATAT TGCAGGCAGT
GAAATCAGCT CCACACGTGA TGTGGCAAAT GCTTACCGGG CCAACAAAGA GAAAGGATCT
TTCTCTGCGA AAGTGAAGAG AAACGGGCAA TCAAAAACAC TGGAAGTAAA AGTGCCGAAG
AAATTAAATA AAGTGGATCT GTAG
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| Protein sequence | MSKLLQTLTL ASITCFAFSS ATIAQDKSSD KLGEYDEIVI KRNTNKDGKV TIEIKDGNVL
VDGDKMDAYK DGDISVYRRR IRPVDGNTFN FAMPPGGGGI QLFNEDDEAG DDAMAIKPGK
AVLGVFTEKK EAVGVTVKEV AKGTPAEKAG LLAGDIITKV DADKVDEPKD LFEKIGAHDP
GDKVTITYLR DKKENTATVT LDERKGEGTL ELFPRNDRNF RRIPRGSFNF GDGGPGQGFP
GPGFNRDFRN FHENNEVKLG LSVQDTEDGK GAVVLSVAPG SAAEKAGFKA NDIVTDIAGS
EISSTRDVAN AYRANKEKGS FSAKVKRNGQ SKTLEVKVPK KLNKVDL
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