| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0405 |
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| Symbol | |
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| ID | 8356511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 485451 |
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| End bp | 488486 |
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| Gene Length | 3036 bp |
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| Protein Length | 1011 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644962551 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003120104 |
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| Protein GI | 256419451 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000611509 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGAA ACGTATTTCA CCTGCTGGCG TTGCTCGCGG GACTGCTGAT CTATTCCTCA
GCAATAGCAC AAACAAGGGG AATAGATGGA ACAGTGACCG ATGAAAAAAA GCAGCCTATC
AGCTTCGCCT CCGTCATCAT CAAAGGCACT TCAAAAGGGA CAACTACTGC GCAGGACGGC
TCATTTAAAC TGGAAGTATC CCCCAATGCC ATACTCATTA TCCGCGCCGT CGGATATAAC
CTGCAGGAGA TTCCTGTTAA TGGTGAACAA CACTTCAATA TCTCGCTGAC AGAAAATGCC
AGTGATCTGA ATGAAGTAGT AGTGACTGCA TTAGGCGTAA AAAAAGAAAA AAGAAATCTC
ACCTTCAGCG CACAGGAGGT AAAAAGCGAT GAGGTATTAC GTGCAAAGGA ACCCAACGTA
CTGAACGCTT TGACAGGAAA GGTAGCCGGT GTACAGATCA CCAGTTCTTC AGGTATGCCA
GGCAGTTCAG CACGTATAGT CATCCGTGGT ATTACCTCCA TATCTGGTGA AAACCAGGCA
CTGTTTGTTA TGGATGGTGT ACCTATTAAC AATGACGAAA GCGGCGGCAC CTATAACGGT
GGTTCAGGCA CCAACAGACT GGCCGATATA GATCCGTCCA CCATTGAAAG CATTAACGTA
TTAAAAGGAG CTGCAGCTAC TGCTTTATAC GGCTCCGCTG GTGCACGAGG GGTTGTACTT
GTCACCACCA GGAAAGGCGC TGCAGGCCGT AAACCAGTAG TGACATTATC ATCCGGTTTA
TCTTTCGAAA AGACCATTTT TCCTGATCGT CAATACCTCT ATGCACAGGG GGACAAAGGC
GTATTCTATG ATGGAGAAAG CATGAAAAGC AGTACCTCAT GGGGACCTCG TATGGATACA
TTAACAGTGA ACGGACAAAA AATAAAAGCG CATAATCCGC TGGAAGAATT CTTCCGGACA
GGCGTGACTT CCAATAGTAC AGTCAGCGTA TCCGGCGGCG GATCGACATC GAATTATTTC
ATGTCTTATT CCTACTTCGA TCAGAAAGGA ACAATACCCG TAACTTCATA TAAACGGCAC
AGTGTATTCA CGAAATACAA CGCGCAGATC ATCGACAAAC TGAACGCTAC TTTTCAGTTG
ACATACAGCA CTGCCAACAA CAAAAAAGTA CCGGAAGGAT ATGGGCTTGA ATCTCCGCTA
TGGACCATCT TTACAGCACC TGTATCCTAT GATCTGAAAC CAGCGCTGAA TCCGGATGGG
TCACAACGTC TGTACCGCTA CAGCCGCAAC AATCCTTACT GGGTATTAGA TAACGTGCTG
AACACAACCG TTGTGAACAG GTTCCTGCCG GTATTTACTT TTGTGTACAC ACCGTTTGAA
TGGCTTTCCG TTACAGAACG CGCAGGTGCT GATATCTACA CTGATCAGCA GACCTATCAC
GTGAATACAA ATGACATTAC CTATGCAACA GGATTAACGT ACTACAACAA TAAAAACTTC
AGACAGTTCA ACCACGATTT CATCGTGCAG CTGAGACAAC AGTTTAACAA CACAAACGTA
AGTCTGCTGT TAGGTAACAA CGTCTATTCA GAACACGGCG ACTTCATGAC GGCATTAGGT
CTCGGATTGG CAAAACCAGG CTATTATAAC ATGGCCAGCG CTTCTTCCAT TACTTATACC
GGCACAGAGT ATCTGAGACG GAAAACAGGC TTCTATGCGC AGGCAGAAGT AGACTACAAT
CGCATGTTAG TACTGTCTCT CACCGGACGA TATGATGGCA GCTCTGTATT GTCCTCCGAA
AACAGATATT ACCCATATGG CTCTGTAGCA GGTGGATTTA TCTTCTCCGA ATTATTCAAA
GACAAGCTGA AAGATGTGAT CAACTTTGGT AAAGTTAGGG CTTCGTTTGC TTCTGTTGGT
AATGACAATG TGAAACCATA CGCTACCACC ACACCCTATT ACCAGGCAGT GATCTATGGG
GATGTGAGCA GCAATCTTAC CTTTCCTTAT AATGGCCAGA ATGGTTTCCT GATCAGCTCT
GCATTAGGTA ACCCTAATCT GAAAAATGAG CTGCAGAAAG AGTATGAACT GGGTCTGGAA
ATGAAAATGT TCAAAAGCAG GGTCGGACTG GAAGCGTCTT ATTTCAACCG GCGTATGACA
CAGGGGATTG TCGAAAACAT CTCACTCGCC AACTCTACCG GTTATGCGAG TACGACTATT
AACTCTGCGA AGATGTCAAC TAAAGGTATT GAAGTACTGT TAAATGTGAC ACCTGTCACC
ACAAAAGATT TCAGCTGGGA TATAACGATC AATTACACAA AGCTGAAACA GAAAGTAGAA
GAGATCAGTC CTGATCTGGA TCAGACAAGC ATTGGCAGTA TTTATGCAAA AAAAGGAGAA
CCATGGGGAT TGATCTTCGG TACTAAATAC GCACGTACAG CAGATGGTCA GTTACGCATC
AATGAAGCAG GATTACCTTA CGCCTCCGGC GAATTTGACG TAGTCGGTAA CATCACACCC
GACTGGATAG GAGGTATCAC GAATCAGTTA CGCTACAAAC AATTCAATTT AAGCTTCTTC
TTTGACACCA AACAGGGCGG TGATATACTG AACTCAGATG ATGGATACGG GCTCTATTAT
GGCAGCTCAA AACAAACAGA AAAACGGGAG GACAGAGTAG TACCAGGTGT CAGCGATGCA
AACAATGCGC CTAACAAACA GGTGGTGACC GGACAGGCCT ATTTCCAGCA GATCAGCGGA
ATTACGGAAG CATTTATTCA GCATGCATCT TACATAAAAC TGCGTAACGT GAGTCTTTCT
TATACTTTCA GAAAAGGCGC AACAGCACGC ACGCCATTCA AAGATGCTTC CATCGTACTT
ACCGGCCGCA ATCTGTGGAT ACACAAAGAC AAAACATTTA CCGGCGGAGA TCCTGAAGTA
AACTCATGGG GCGCTGGTAA TGGCGGATTA GGCGTATATA CTTTCTCTGC GCCTACAGCC
CGTTCATTTG ACTGCACATT AAAATTCACG TTCTAG
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| Protein sequence | MKRNVFHLLA LLAGLLIYSS AIAQTRGIDG TVTDEKKQPI SFASVIIKGT SKGTTTAQDG
SFKLEVSPNA ILIIRAVGYN LQEIPVNGEQ HFNISLTENA SDLNEVVVTA LGVKKEKRNL
TFSAQEVKSD EVLRAKEPNV LNALTGKVAG VQITSSSGMP GSSARIVIRG ITSISGENQA
LFVMDGVPIN NDESGGTYNG GSGTNRLADI DPSTIESINV LKGAAATALY GSAGARGVVL
VTTRKGAAGR KPVVTLSSGL SFEKTIFPDR QYLYAQGDKG VFYDGESMKS STSWGPRMDT
LTVNGQKIKA HNPLEEFFRT GVTSNSTVSV SGGGSTSNYF MSYSYFDQKG TIPVTSYKRH
SVFTKYNAQI IDKLNATFQL TYSTANNKKV PEGYGLESPL WTIFTAPVSY DLKPALNPDG
SQRLYRYSRN NPYWVLDNVL NTTVVNRFLP VFTFVYTPFE WLSVTERAGA DIYTDQQTYH
VNTNDITYAT GLTYYNNKNF RQFNHDFIVQ LRQQFNNTNV SLLLGNNVYS EHGDFMTALG
LGLAKPGYYN MASASSITYT GTEYLRRKTG FYAQAEVDYN RMLVLSLTGR YDGSSVLSSE
NRYYPYGSVA GGFIFSELFK DKLKDVINFG KVRASFASVG NDNVKPYATT TPYYQAVIYG
DVSSNLTFPY NGQNGFLISS ALGNPNLKNE LQKEYELGLE MKMFKSRVGL EASYFNRRMT
QGIVENISLA NSTGYASTTI NSAKMSTKGI EVLLNVTPVT TKDFSWDITI NYTKLKQKVE
EISPDLDQTS IGSIYAKKGE PWGLIFGTKY ARTADGQLRI NEAGLPYASG EFDVVGNITP
DWIGGITNQL RYKQFNLSFF FDTKQGGDIL NSDDGYGLYY GSSKQTEKRE DRVVPGVSDA
NNAPNKQVVT GQAYFQQISG ITEAFIQHAS YIKLRNVSLS YTFRKGATAR TPFKDASIVL
TGRNLWIHKD KTFTGGDPEV NSWGAGNGGL GVYTFSAPTA RSFDCTLKFT F
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