| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0401 |
|---|
| Symbol | |
|---|
| ID | 8356507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 479583 |
|---|
| End bp | 480515 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644962547 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003120100 |
|---|
| Protein GI | 256419447 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGGCG TGAAAGAGGT TCAGGATATA TTAGCATTGG CTATCAGGCA GCCCGCGATG
AGCGATCAGC TGCAGCTGGC AGAAAACGAC GCTGTAGCGG TGCCGGACTG CCTCGACTTT
ACATTGCAAC GGTTTACGTA TGATCGTCCG TTGCCGGTAG AAGATATTGC CATGGTGGTA
TATCAACCTG CCAAACGTGG TCAGACTGCT GCCATTGAGT TGCGCTATTG TGTCGCCGGC
AATAAATATT GTCAGAATCC GGGTTGTACG GATCAGGTAT GTGCTGGCGG GCATAAAGAC
AACTGTGTAC AGAAGTCTCC ATCTATTGAT ATGATCACTG TAAGGTTTCA GCCTTCTTTC
ATACAATCCC TGCAGAAAGG GTCTACCAAC TCTACCCTTT TTGACATGCA GTCCCGCAAG
CCTTTTGTGA AGACGATTCA GCCAAGCACT AAATCCAAAG AGGTGCTGGA GCAGATGGTA
CATCATAATT ATGATGGCGC CCTGAAGAAT ATCTTCCTGC AGAGTAAAGC GTTGGAACTC
TTACTGTTTA GTTCTGACCA GTTTGTACAG AATGATACGG ATGATCGTTA TGGTTGTCGT
TTCCTGACAC AGCTGGAAGA CCGTGAAAAG ATCGAAAAGG CAAGAGATAT TTTACTGGAG
CAGCTGGATG CACCGATTAC GATCCGTGAC CTGGCTCGTC GTGTTGCGAT GAATGAATGT
TACCTGAAAA AAGGGTTCAA AGCGATGTAT GGCACTACGA TCTATGATTA TTTCCAGAAA
GAGAGAATGG AAAAGGCCAA AAGCCTGCTG TACGAAAGAG GCATGTCTGT GTCTGAGGTA
GCGATTCTGA TGGGTTATTC CTGTATTTCG CACTTCTCTA CCGCTTTTAA GAAGCACACA
GGACTGAAGC CATGTGAATT GCTGCTGAGA TGA
|
|---|
| Protein sequence | MQGVKEVQDI LALAIRQPAM SDQLQLAEND AVAVPDCLDF TLQRFTYDRP LPVEDIAMVV
YQPAKRGQTA AIELRYCVAG NKYCQNPGCT DQVCAGGHKD NCVQKSPSID MITVRFQPSF
IQSLQKGSTN STLFDMQSRK PFVKTIQPST KSKEVLEQMV HHNYDGALKN IFLQSKALEL
LLFSSDQFVQ NDTDDRYGCR FLTQLEDREK IEKARDILLE QLDAPITIRD LARRVAMNEC
YLKKGFKAMY GTTIYDYFQK ERMEKAKSLL YERGMSVSEV AILMGYSCIS HFSTAFKKHT
GLKPCELLLR
|
|---|
| |