| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0232 |
|---|
| Symbol | |
|---|
| ID | 8356336 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 277695 |
|---|
| End bp | 279395 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644962378 |
|---|
| Product | ABC-type uncharacterized transport system involved in gliding motility auxiliary component |
|---|
| Protein accession | YP_003119933 |
|---|
| Protein GI | 256419280 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG3225] ABC-type uncharacterized transport system involved in gliding motility, auxiliary component |
|---|
| TIGRFAM ID | [TIGR03521] gliding-associated putative ABC transporter substrate-binding component GldG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTACTA ATAGAAGGAA TCAATATATA CAACGGGCGA TACTTGTGGT GGGCGTTCTT
GTAGGCATCA ATATACTGGC TGCTTATTTT CATACCCGTC TGGATCTGAC CGCTGAAAAA
AGATATACAC TTACTCCTGC TACCAAAACC CTGCTCCGCG GGCTGGACAG CACTGTTACC
ATAGAAGTTT TTCTGAAAGG GGATTATCCC GCCAGTTTCC GTCAGCTGGC CCAAACCAGC
CAGGAATTGC TGGAAGAGTT CAGAGAATAT GGCGGTAACC GCATACAATT CTCTTTCCAG
AACCCGGGCC AGGGACTGCC GGATTCCTCC CGTATGGCAT TTCAGCAATC ACTGGTAGAA
AAAGGCATTA TGCCTTTTAA TATGCAGGTG CAGGAAGACG CCAACCAGGG ATATTCTGAA
AAACTGATCT TCCCCGGCGC ATTGATACAT TACGGTACCA GAACAGTCGG CATTAATCTC
CTGAAAAGCC AGGGCGGATT AAATCCAGAC GCGGCGATGA ATAATTCAGA ATCCCTGCTG
GAATACCAGT TCGCCAACGC AATTTATCAA CTGCAACAGA AACGGACGCC ACTGGTAGGA
TATATGCTGG GTAATGGTGA GCAACTGGGA GCAGAGGTAT ACGATGCACT CACCACCATG
CAGAGCAACT ATATGCTGGA TACACTGACA CTACAGTACA TTTCCTATAT CCCTAAAGAG
TTTGACGCGG TTGTATTTGC AAAACCAGCC TCACGCTTCT CAGACGAGGA TAAGCTGAAA
ATAGACCAGT ATGTGATGAA TGGAGGTAAG GTGTTGTGGT TTATCGACGA ACTGAATGCT
TCCATTGACA GTCTTGCGCA CCAGGAAAGC TTCGTCGCAT TTGATAAAGG ATTGAACCTG
GAAGATATCC TGTTCCGTTA TGGTGTACGT ATCAATCAGG ACCTTGTACA GGACATGCAG
TCTGACTTTG TACCACAGGT TGTGGATCGT ACAGGACAGA TGCAGCCATT AGCATTTCCG
TTCTTCCCGC TGCTGACACC TACCGGTGCA CATCCGATTG TAAAAAATAT GGACCTTGTG
CTGAGCCACT TTGCCAGCTC TATCGATACT ATAAAAGGCG GTAATATCAA GAAAACAGTA
CTGTTGACCA CCTCAGCTAA CAGCCGTAGT GTAAGCTCCC CTACAGAGGT TACCTGGAAC
AGTCTGCGTA CGAAACCGAA TCCACGTGAA TTCAATAAGA AATTCCTGCC GGTAGCGGTA
TTACTGGAAG GAGAATTCAC CTCTCTGTTC CGCAACCGTC TTGATGCCGG CACTCAACAG
GCCATTCAAA AGGCGACAGG CAGACCGTTT AAGAACAACA GCGACACAAT CAATAAAATG
ATCGTTGTGA GCGATGCCGA TGTCATCACC AATGCTTTCT CACAGAAAAG TGGTCCGCTG
CAAATGGGGG TTAACCTCTA CGATCAGTCA ATGGTCTATG CTAACCGCGA ATTCTTCCTT
AATACCCTGG GCTACCTGAC CCATAACACA GGCATCATGG ACGCGCGTAA CAAAGAATTA
ACCCTGCGCC TGCTGAATCC GGAAAAAGTA AAACTGGAAA AAAGCAAGTG GCAGGCAATT
TGTTTCATCG TTCCTGTCGG ACTGATCTTA TTGTTCGCTT CGGTGTTTAT GTTTTTCAGA
AAAAGGAAAT TCGAGGTATA G
|
|---|
| Protein sequence | MATNRRNQYI QRAILVVGVL VGINILAAYF HTRLDLTAEK RYTLTPATKT LLRGLDSTVT
IEVFLKGDYP ASFRQLAQTS QELLEEFREY GGNRIQFSFQ NPGQGLPDSS RMAFQQSLVE
KGIMPFNMQV QEDANQGYSE KLIFPGALIH YGTRTVGINL LKSQGGLNPD AAMNNSESLL
EYQFANAIYQ LQQKRTPLVG YMLGNGEQLG AEVYDALTTM QSNYMLDTLT LQYISYIPKE
FDAVVFAKPA SRFSDEDKLK IDQYVMNGGK VLWFIDELNA SIDSLAHQES FVAFDKGLNL
EDILFRYGVR INQDLVQDMQ SDFVPQVVDR TGQMQPLAFP FFPLLTPTGA HPIVKNMDLV
LSHFASSIDT IKGGNIKKTV LLTTSANSRS VSSPTEVTWN SLRTKPNPRE FNKKFLPVAV
LLEGEFTSLF RNRLDAGTQQ AIQKATGRPF KNNSDTINKM IVVSDADVIT NAFSQKSGPL
QMGVNLYDQS MVYANREFFL NTLGYLTHNT GIMDARNKEL TLRLLNPEKV KLEKSKWQAI
CFIVPVGLIL LFASVFMFFR KRKFEV
|
|---|
| |