Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0106 |
Symbol | |
ID | 8356205 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 128386 |
End bp | 130833 |
Gene Length | 2448 bp |
Protein Length | 815 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644962250 |
Product | Beta-galactosidase |
Protein accession | YP_003119810 |
Protein GI | 256419157 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCTGA AAAAAATTTT GCTATCGGGT AGCCTTTTGC TCTCTTTAGC CTCCTATGGA CAAACAAAAA AACTGCCGCT ACTCCGTGAG CAGTTACTCG ATGATCACTG GCTTTTCAAA AAAGATAGTC TGCCGGGCGC AGAAAAAACA GACTTCCCGG AGACAGGCTG GAAGACACTC CACCTGCCGC ACGACTGGGC TATCGAAGAC CTGCCCGGAC AGAACGACAG TACCATTATC GGCCCTTTTT ACAAGTATAG CCCGGCACAG GAGCACGGCG CTTATGTTGT AGGGGGTACC GGCTGGTACC GGAAGTCTTT TGCGTTACCG GCTATTCCCG CCGGACAAAC CGTTGCCATC CGGTTTGAAG GTGTTTATAT GGACAGCGAC GTCTGGATCA ACGGACATTA TCTCGGTAAT CACCCCTATG GGTATACGCC CTTTACCTAC GATCTGACAC CCTATCTGGC TGCACCGGGT AAAAAGAATG TGGTGGCGGT CAGGGTGAAG AATGAAGGAA TTAATTCCCG CTGGTATACC GGTGCAGGTA TCTACCGTCA TGTGCACCTC GAGGTGCTGC CGGCAGATCA ACTGGTAAAG GAAGCCACTT TCATCACTTT CCCGGAAGCG GGAAAAACCA AAGCGATTGT ACAGGTATCA GCGGCTATTA TCAGTCAACA GGATGCCGGC AGAATAGTCG AGATCAGTCT CAGGGATAGC AGTGGTCAGG TCGTTGCAAC CGCTGCGCAG TCTATCCAGT TAAAAGCAAA AGATACCATC TCCTTCATAA AACAGCTTAC GGTGCTGAAT CCGGCGCTCT GGTCGCCTGG CAGACCCTAT CTCTATACAA CCGAAATTAA GCTGTCTGAC ACCGTTAAAA TAGCCAAAGA AAAGGTGTTA GATGCGCTGA GCTTCCCTAC TGGTATCCGG CGGATCAGTA TCACCGCAAC AAAAGGCTTC CTGCTCAATG GAGAAAAAGT ATTACTGAAA GGGGGCTGTC TGCATCACGA CAATGGCCTG CTGGGGGCAG CCGCTTTTGA CCGGGCGGAA GAACGAAAAG TGGAACTCAT GAAAGCAAAC GGGTTCAATG CGATCCGTAC CAGTCATAAC CCGCCATCTG AAAAATTCCT GGAGGCCTGT GACCGCCTGG GTATGCTTGT CATCGACGAA CTGTTCGATA TGTGGACAGA ACAGAAACAT CCGCAGGATT ATCACCGTTT CTTCGCACAA TGGTGGCAAC AGGACTTACG CAGCGTTTTG TTGCGCGACA GAAACCATCC TTCCGTCATC ATGTGGAGCA TCGGCAATGA GATTCCCGAA AGGGCTGACA AAGAAGGACT CGCTATTACC AAAGCAATGA TCCACGCCGT ACGCCAGTAT GACACCACCC GGGCTATCAC GGAGGCGGTC CCTGAATTCT GGGAACGTCC CTATCAGTGG CAGGCAGCAG ATCCGGTATT TGCCCTGCTG GATGTAGCAG GTTATAACTA CCAGTGGAAA AACTATGCAC TCGACGAAAG ACGTGTGCCC GGCCGTGTAA TGGTAGGCAC AGAAACACTG CCCGCCGACC TGTATGACAC CTGGAACCAG GTACAGGGAC TTCCCTTCGT CATCGGTGAT TTTGTATGGA CCGCCATGGA TTATCTCGGA GAAGCCGGTA TCGGACATTC CACTTACACC CGCACGGCTC AGGGTAGACG CACCTTTCCC TGGATCAATG CTTTCTGCGG CGATATAGAC CTGATAGGCA ACAAAAAACC GCAATCTTTT TACCGGGACA TAGTATGGCG GAATAGTCCC GTAGAGATGC TCGTACACGC ACCTGTTCCC GAAGGGAAAA AAGAGAAAGT AAGTCGCTGG GGATGGCCGG ATGAATCCGA CTCCTGGACC TGGCGGGGTA TGAACGGGAA AAATATGCAG GTACGGGTCT TTACACGCGC CAGAAAAATT GACCTGATCC TGAATGATTT CAGGGTCGCT ACAAAAGAAG TGTCTGATAG TACACCGTTG ACCGTCACCT TTGACGTTCC TTATGCTCCT GGTCAGTTAA CCGCATTTGC GTATGACAGC AAAGGCAATG AAATAGGGAT TAAAGCAATA GCAACTGCCA ATCCACCCAC TGCTATCAGA CTGACTGCTG ATCACACGAC GATTGCCGCC GGTAACGGGT CACTGGCCTA TGTGAAAGTG GAAGTAACTG ACGATCAGGG CAGGGTAGTA CCTGATGCCA ATTTACCGCT ACAGATCAGC ATCAGTGGAA ACGGTTCTCT CGCAGGTGCA GGAAATGCTT GTCCGGATTG CCCGGCCAGC TTCCAGCAAC CAAAAATAAA TAGCTATAAA GGGTATGCTT TGGTCATTTT AAGGGCAAAT GAGCAACCAG GTAATATTAG CGTCGAAGTA AAGAGTAAGG GGCTGAAAAC GGCCAAAATT GATATTAAAA CGAAATAG
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Protein sequence | MRLKKILLSG SLLLSLASYG QTKKLPLLRE QLLDDHWLFK KDSLPGAEKT DFPETGWKTL HLPHDWAIED LPGQNDSTII GPFYKYSPAQ EHGAYVVGGT GWYRKSFALP AIPAGQTVAI RFEGVYMDSD VWINGHYLGN HPYGYTPFTY DLTPYLAAPG KKNVVAVRVK NEGINSRWYT GAGIYRHVHL EVLPADQLVK EATFITFPEA GKTKAIVQVS AAIISQQDAG RIVEISLRDS SGQVVATAAQ SIQLKAKDTI SFIKQLTVLN PALWSPGRPY LYTTEIKLSD TVKIAKEKVL DALSFPTGIR RISITATKGF LLNGEKVLLK GGCLHHDNGL LGAAAFDRAE ERKVELMKAN GFNAIRTSHN PPSEKFLEAC DRLGMLVIDE LFDMWTEQKH PQDYHRFFAQ WWQQDLRSVL LRDRNHPSVI MWSIGNEIPE RADKEGLAIT KAMIHAVRQY DTTRAITEAV PEFWERPYQW QAADPVFALL DVAGYNYQWK NYALDERRVP GRVMVGTETL PADLYDTWNQ VQGLPFVIGD FVWTAMDYLG EAGIGHSTYT RTAQGRRTFP WINAFCGDID LIGNKKPQSF YRDIVWRNSP VEMLVHAPVP EGKKEKVSRW GWPDESDSWT WRGMNGKNMQ VRVFTRARKI DLILNDFRVA TKEVSDSTPL TVTFDVPYAP GQLTAFAYDS KGNEIGIKAI ATANPPTAIR LTADHTTIAA GNGSLAYVKV EVTDDQGRVV PDANLPLQIS ISGNGSLAGA GNACPDCPAS FQQPKINSYK GYALVILRAN EQPGNISVEV KSKGLKTAKI DIKTK
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